installed FSL FIX 1.061 on qball3

[stowler]

Installed and tested FSL's FIX on qball3:

1. matlab: already installed: R2014b in /usr/local/MATLAB/R2014b

2. downloaded, unziped, and moved fix to destination:

   dzdo cp -r fix1.06 /opt/
   dzdo ln -s /opt/fix1.06 /opt/fix

3. Installed R on qball3 (Adapted from my instructions)

   dzdo apt-get install r-base r-base-dev
   dzdo apt-get install unixodbc-dev
   dzdo apt-get install xorg-dev libx11-dev libxml2-dev libopenmpi-dev mesa-utils glew-utils
   dzdo apt-get build-dep r-cran-rjava
   dzdo apt-get build-dep r-cran-rgl
   
   dzdo R --no-save
   install.packages("kernlab", dependencies=TRUE)
   install.packages("ROCR", dependencies=TRUE)
   install.packages("class", dependencies=TRUE)
   install.packages("party", dependencies=TRUE)
   install.packages("e1071", dependencies=TRUE)
   install.packages("randomForest", dependencies=TRUE)
   
   # Deferred full rgl/car/Rcmdr install from my R instruction above due to
   # pre-R-3.0 conflicts on this host. Shouldn't affect FIX.

4. Edited FIX's settings.sh:

   FSL_FIX_MATLAB_ROOT=/usr/local/MATLAB/R2014b
   FSL_FIX_MATLAB_MODE=1

5. Added entry to /etc/bash.bashrc:

   export PATH=/opt/fix:${PATH}

6. Tested fix:

   /opt/fix/fix \
   ~/src.mywork.gitRepos/brainwhere/utilitiesAndData/imagesFromAFNI/FT_epi_r1.ica \
   /opt/fix/training_files/Standard.RData \
   20 \
   -m