Programs - installed and callable from command-line
FreeSurfer - and needs license file in $FREESURFER_HOME
FSL
AFNI
IDL (no license needed)
TrackVis (version 6)
ITKSNAP (most current version)
vim
bc/cut
dcm2nii
htop
Folders
/opt/PanTrack
Shortcuts
PanTrackDIR = opt/PanTrack
Permissions
I need rwx permissions/ownership on the PanTrack folder
I need rwx permissions in the folders I work in
I need rwx permissions on $FREESURFER_HOME
SIMONE’S NEUROIMAGING ENVIRONMENT
Programs - installed and callable from command-line
FreeSurfer - and needs license file in $FREESURFER_HOME FSL AFNI IDL (no license needed) TrackVis (version 6) ITKSNAP (most current version) vim bc/cut dcm2nii htop
Folders
/opt/PanTrack
Shortcuts
PanTrackDIR = opt/PanTrack
Permissions
I need rwx permissions/ownership on the PanTrack folder I need rwx permissions in the folders I work in I need rwx permissions on $FREESURFER_HOME