search

CVNRneuroimaging / infrastructure

Issue tracking, system documentation and configs for operations side of the neuroimaging core @ Atlanta VA CVNR / Emory University
3 stars 2 forks source link

can't log-in to falx using X2GO #181

Open GiriKrish opened 5 years ago

GiriKrish commented 5 years ago

Keith, I get the following error when I try to log in to falx: Screen Shot 2019-04-24 at 1 49 15 PM

Thanks for your help! -Giri

kmcgregor123456 commented 5 years ago

Try now. I edited the .profile settings on the account.

================ Keith M. McGregor, PhD VA RR&D Atlanta CVNR Emory University, Department of Neurology 352.359.8084 www.varrd.emory.eduhttp://www.varrd.emory.edu

From: GiriKrish notifications@github.com Sent: Wednesday, April 24, 2019 3:52 PM To: CVNRneuroimaging/infrastructure Cc: Subscribed Subject: [External] [CVNRneuroimaging/infrastructure] can't log-in to falx using X2GO (#181)

Keith, I get the following error when I try to log in to falx: [Screen Shot 2019-04-24 at 1 49 15 PM]https://user-images.githubusercontent.com/18486285/56689369-ebe98780-66a8-11e9-91b6-05ccf18761c5.png

Thanks for your help! -Giri

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://github.com/CVNRneuroimaging/infrastructure/issues/181, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ABG3KMHCPJR5JANCPV4P5UTPSC3ALANCNFSM4HIHLX3Q.

This e-mail message (including any attachments) is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If the reader of this message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this message (including any attachments) is strictly prohibited.

If you have received this message in error, please contact the sender by reply e-mail message and destroy all copies of the original message (including attachments).

GiriKrish commented 5 years ago

I'm able to log-in now...thank you!! Now, I get this which has to do with my .bashrc file : bash: /usr/share/fsl/5.0/etc/fslconf/fsl.sh: No such file or directory giri@falx:~/Desktop$ fsl & [1] 96543 giri@falx:~/Desktop$ You need to set the FSLDIR environment variable to point to the FSL installation directory before you can run anything.

AFNI and Matlab works fine.

Thanks, Giri

kmcgregor123456 commented 5 years ago

Yes. That's related to the updates to FSL 6.0.1, actually.

The issue is that Qball1 is still on the neurodebian installation. I knew that you did most of your work on that machine, so I did not want to modify it, as you stated that the environment was satisfactory for your work.

However, if you want to switch to the new installations, we will have to update the .bashrc, which will require me to upgrade qball1, as well.

Let me know if you want to do the switch and I will make the necessary changes.

================ Keith M. McGregor, PhD VA RR&D Atlanta CVNR Emory University, Department of Neurology 352.359.8084 www.varrd.emory.eduhttp://www.varrd.emory.edu

From: GiriKrish notifications@github.com Sent: Thursday, April 25, 2019 10:00 AM To: CVNRneuroimaging/infrastructure Cc: Keith McGregor; Comment Subject: [External] Re: [CVNRneuroimaging/infrastructure] can't log-in to falx using X2GO (#181)

I'm able to log-in now...thank you!! Now, I get this which has to do with my .bashrc file : bash: /usr/share/fsl/5.0/etc/fslconf/fsl.sh: No such file or directory giri@falx:/Desktop$ fsl & [1] 96543 giri@falx:/Desktop$ You need to set the FSLDIR environment variable to point to the FSL installation directory before you can run anything.

AFNI and Matlab works fine.

Thanks, Giri

— You are receiving this because you commented. Reply to this email directly, view it on GitHubhttps://github.com/CVNRneuroimaging/infrastructure/issues/181#issuecomment-486685023, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ABG3KMAK5H6M3RAHNKMUQW3PSG2PRANCNFSM4HIHLX3Q.

This e-mail message (including any attachments) is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If the reader of this message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this message (including any attachments) is strictly prohibited.

If you have received this message in error, please contact the sender by reply e-mail message and destroy all copies of the original message (including attachments).

GiriKrish commented 5 years ago

Sorry, I'm confused. I got the above message from falx. I prefer to use falx as well as qball1. Is that ok ? Thanks.

kmcgregor123456 commented 5 years ago

That'll be an issue. Qball1 uses the older neurodebian, which has not been updated in a while. The newer version of FSL 6.0.1 is installed on the higher capacity systems. I would rather update qball1 to FSL 6.0.1, are you in favor of this? If so, I can make the switch immediately.

================ Keith M. McGregor, PhD VA RR&D Atlanta CVNR Emory University, Department of Neurology 352.359.8084 www.varrd.emory.eduhttp://www.varrd.emory.edu

From: GiriKrish notifications@github.com Sent: Thursday, April 25, 2019 11:02 AM To: CVNRneuroimaging/infrastructure Cc: Keith McGregor; Comment Subject: [External] Re: [CVNRneuroimaging/infrastructure] can't log-in to falx using X2GO (#181)

Sorry, I'm confused. I got the above message from falx. I prefer to use falx as well as qball1. Is that ok ? Thanks.

— You are receiving this because you commented. Reply to this email directly, view it on GitHubhttps://github.com/CVNRneuroimaging/infrastructure/issues/181#issuecomment-486711780, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ABG3KMCFHRM6BI6WARFW3HDPSHBZZANCNFSM4HIHLX3Q.

This e-mail message (including any attachments) is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If the reader of this message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this message (including any attachments) is strictly prohibited.

If you have received this message in error, please contact the sender by reply e-mail message and destroy all copies of the original message (including attachments).

GiriKrish commented 5 years ago

I am not fixated on qball1. If it helps to update qball1, I am in agreement with that.

Also, I don’t ssh into falx from qball1. I typically log-in to falx directly.

My concern is with the fsl error I am getting on falx, and I want to use fsl on falx. What needs to be changed such that I can use FSL on falx ? Sorry, if my question was not clear before, but hope it’s more clear now…

GiriKrish commented 5 years ago

I would like to switch to FSL 6.0.1 so that I can be functional on falx, genu, ralph, lens etc.

kmcgregor123456 commented 5 years ago

It should be fixed now. I changed your bashrc to use the FSL 6.0.1 in /usr/local/fsl

I have installed FSL 6.0.1 on qball1 in the same location, so it should work. You just need to login again on qball1.

AFNI is going to have to be removed from the neurodebian, as well. It's nearly a year behind the current build.

================ Keith M. McGregor, PhD VA RR&D Atlanta CVNR Emory University, Department of Neurology 352.359.8084 www.varrd.emory.eduhttp://www.varrd.emory.edu

From: GiriKrish notifications@github.com Sent: Thursday, April 25, 2019 11:12 AM To: CVNRneuroimaging/infrastructure Cc: Keith McGregor; Comment Subject: [External] Re: [CVNRneuroimaging/infrastructure] can't log-in to falx using X2GO (#181)

I am not fixated on qball1. If it helps to update qball1, I am in agreement with that.

Also, I don’t ssh into falx from qball1. I typically log-in to falx directly.

My concern is with the fsl error I am getting on falx, and I want to use fsl on falx. What needs to be changed such that I can use FSL on falx ? Sorry, if my question was not clear before, but hope it’s more clear now…

— You are receiving this because you commented. Reply to this email directly, view it on GitHubhttps://github.com/CVNRneuroimaging/infrastructure/issues/181#issuecomment-486715766, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ABG3KMHN5MQ6Y7KA3WRPWT3PSHC6TANCNFSM4HIHLX3Q.

This e-mail message (including any attachments) is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If the reader of this message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this message (including any attachments) is strictly prohibited.

If you have received this message in error, please contact the sender by reply e-mail message and destroy all copies of the original message (including attachments).

GiriKrish commented 5 years ago

FSL works...YAY!! Thank you!!!! :-)