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CVNRneuroimaging / infrastructure

Issue tracking, system documentation and configs for operations side of the neuroimaging core @ Atlanta VA CVNR / Emory University
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review Smith (2011) and responses in literature #29

Open stowler opened 10 years ago

stowler commented 10 years ago

This article and some subset of the > 200 articles citing it can provide good working knowledge of current network analysis techniques:

Smith, S. M., Miller, K. L., Salimi-Khorshidi, G., Webster, M., Beckmann, C. F., Nichols, T. E., et al. (2011). Network modelling methods for FMRI. NeuroImage, 54(2), 875–891. doi:10.1016/j.neuroimage.2010.08.063

(per my 20140417 article presentation and agreement from Bruce, Keith, and Joe)

stowler commented 10 years ago

20140625 stowler email about the next five articles:

When we left off last Thursday, the plan was for Keith to lead discussion of this TICS article tmw:

Smith, S. M., Vidaurre, D., Beckmann, C. F., Glasser, M. F., Jenkinson, M., Miller, K. L., et al. (2013). Functional connectomics from resting-state fMRI. Trends in Cognitive Sciences, 17(12), 666–682. doi:10.1016/j.tics.2013.09.016

Per my notes on Bruce's travel schedule, these are the next four dates we have available for articles, and my suggestions about what we cover. Volunteer needed to lead discussions for July 31 and August 21:

JULY 10 Stephen leads introduction to one MVPA method: Kriegeskorte, N., Mur, M., & Bandettini, P. A. (2008). Representational similarity analysis - connecting the branches of systems neuroscience. Frontiers in Systems Neuroscience, 2, 4–28. doi:10.3389/neuro.06.004.2008

JULY 31 Someone (TBD) leads discussion of Krish's response to Smith 2011: Sathian, K., Lacey, S., Stilla, R., Gibson, G. O., Deshpande, G., Hu, X., et al. (2011). Dual pathways for haptic and visual perception of spatial and texture information. NeuroImage, 57(2), 462–475. doi:10.1016/j.neuroimage.2011.05.001

AUGUST 14 Stephen leads discussion about test-retest metrics for network connectivity: Fiecas, M., Ombao, H., van Lunen, D., Baumgartner, R., Coimbra, A., & Feng, D. (2013). Quantifying temporal correlations: a test-retest evaluation of functional connectivity in resting-state fMRI. NeuroImage, 65, 231–241. doi:10.1016/j.neuroimage.2012.09.052

AUGUST 21 Someone (TBD) leads discussion of differences between univariate analysis and MVPA: Davis, T., LaRocque, K. F., Mumford, J. A., Norman, K. A., Wagner, A. D., & Poldrack, R. A. (2014). What do differences between multi-voxel and univariate analysis mean? How subject-, voxel-, and trial-level variance impact fMRI analysis. NeuroImage, 97C, 271–283. doi:10.1016/j.neuroimage.2014.04.037

stowler commented 10 years ago

20140626: I emailed group ~ : no time for Keith's article today, so it's bumped to July 10 meeting for a two-article morning.

stowler commented 10 years ago

W, 20140702: I emailed reminder that there's no meeting this week, and we're doing two articles next week July 10.