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CahanLab / CellNet

CellNet: network biology applied to stem cell engineering
MIT License
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cn_salmon #14

Open gloriafight opened 4 years ago

gloriafight commented 4 years ago

The error is below.I want to know how to solve it.Thank you. determining read length Trimming reads sh: 1: parallel: not found Salmon sh: 1: parallel: not found rm: cannot remove '*trimmed.fq': No such file or directory ./salmonRes_SRR1501367/quant.sf Error in file(file, "rt") : cannot open the connection In addition: Warning messages: 1: In system(cmd) : error in running command 2: In system(cmd) : error in running command 3: In file(file, "rt") : cannot open file './salmonRes_SRR1501367/quant.sf': No such file or directory.

pcahan1 commented 2 years ago

We have now created a web application that takes as input an expression matrix (counts, TPM, or FPKM), and sample meta-data, and performs CellNet analysis. Additionally, this tool includes analysis of many state-of-the-art differentiation protocols, so that you can benchmark your results against those commonly used methds:

https://cahanlab.org/resources/agnosticCellNet_web/