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CalabreseLab
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seekr
A library for counting small kmer frequencies in nucleotide sequences.
http://seekr.org
MIT License
24
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14
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Testdev
#29
Shuang-Plum
closed
6 months ago
0
seekr_kmer_counts：how to don't do per KB, just count
#28
liuyuchenlab
opened
7 months ago
0
Modifying README
#27
megara23
opened
1 year ago
0
How to reproduce the communities in your article?
#26
kikegoni
opened
1 year ago
0
AttributeError: module 'networkx.classes' has no attribute 'graph'
#25
petersamoaa
opened
1 year ago
0
option to transpose output
#24
jmcalabr
opened
3 years ago
1
seekr_domain_pearson percentile function overwrites data in rows with identical names
#23
jmcalabr
opened
3 years ago
6
unrecognized arguments: -o
#22
sun8841
closed
3 years ago
0
log2 parameter of kmer_count.BasicCounter in the python modul
#21
MaxFeussner
closed
3 years ago
3
option to exclude k-mers with zero counts?
#20
jmcalabr
opened
3 years ago
6
issue with --log2 compatibility in seekr_domain_pearson?
#19
jmcalabr
closed
3 years ago
5
"example" section of seekr_kmer_counts needs small update
#18
jmcalabr
closed
4 years ago
2
Broken links
#17
erisemberg
closed
4 years ago
1
Blank lines in fasta don't have a useful error message
#16
Jessime
opened
4 years ago
0
Smooth UI to --log2
#15
Jessime
closed
4 years ago
2
Logchanges
#14
dan-sprague
closed
4 years ago
0
Attempt removing MACOSX_DEPLOYMENT_TARGET check
#13
Jessime
closed
4 years ago
0
module 'networkx' has no attribute 'connected_component_subgraphs'
#12
zengXchao
closed
4 years ago
3
SyntaxError
#11
Ci-TJ
closed
4 years ago
4
installing on a CentOS cluster without sudo rights
#10
genutis
closed
4 years ago
7
Are the seekr available for the noncoding RNAs that are short than 200nt?
#9
Ci-TJ
closed
5 years ago
3
How to visualize generated data files
#8
geng-lee
closed
5 years ago
1
Does the output file in a csv format after running seekr_kmer_counts contain z-score of k-mer counts/kb or just k-mer counts/kb?
#7
YeonuiKwak
closed
5 years ago
1
Seek_Graph doesn't work.
#6
YeonuiKwak
closed
5 years ago
9
-nb flag & how to view gml output file?
#5
kac2053
opened
5 years ago
1
installation issue
#4
kac2053
closed
5 years ago
27
seekr_graph with cross species classification
#3
kmothera
closed
3 years ago
11
Namespace error log2
#2
kmothera
closed
5 years ago
3
what is the function of norm_vectors ?
#1
imliuan
closed
5 years ago
2