31% make error

[GoogleCodeExporter]

Trying to make opencurrent-1.1.0

on 31% it says
[  31%] Building CXX object 
ocustorage/CMakeFiles/ocustorage.dir/gridnetcdf.cpp.o
/home/bravo/opencurrent-1.1.0/src/ocustorage/gridnetcdf.cpp: In member function 
‘bool ocu::NetCDFGrid3DWriter::open(const char*, int, int, int, float, float, 
float)’:
/home/bravo/opencurrent-1.1.0/src/ocustorage/gridnetcdf.cpp:204: error: 
‘NC_NETCDF4’ was not declared in this scope
/home/bravo/opencurrent-1.1.0/src/ocustorage/gridnetcdf.cpp: In member function 
‘bool ocu::NetCDFGrid3DWriter::define_variable(const char*, nc_type, 
ocu::GridStaggering, float, float, float)’:
/home/bravo/opencurrent-1.1.0/src/ocustorage/gridnetcdf.cpp:281: error: 
‘nc_def_var_deflate’ was not declared in this scope
/home/bravo/opencurrent-1.1.0/src/ocustorage/gridnetcdf.cpp: In member function 
‘bool ocu::NetCDFGrid3DReader::open(const char*)’:
/home/bravo/opencurrent-1.1.0/src/ocustorage/gridnetcdf.cpp:492: error: 
‘nc_inq_varids’ was not declared in this scope

Maybe it's because of new CUDA 3.2? or i'm just linux noob
my system and card:
ubuntu 10.04
GF104 geforce 460, sm_21
netcdf-4.1.1 compiled by myself

Original issue reported on code.google.com by zagoruy...@gmail.com on 23 Oct 2010 at 8:42

[GoogleCodeExporter]

I've got the same problem.

...
Scanning dependencies of target ocustorage
[ 27%] Building CXX object ocustorage/CMakeFiles/ocustorage.dir/grid2dhost.cpp.o
[ 28%] Building CXX object ocustorage/CMakeFiles/ocustorage.dir/grid3d.cpp.o
[ 30%] Building CXX object ocustorage/CMakeFiles/ocustorage.dir/grid3dops.cpp.o
[ 31%] Building CXX object ocustorage/CMakeFiles/ocustorage.dir/gridnetcdf.cpp.o
/home/marcel/Desktop/opencurrent/src/ocustorage/gridnetcdf.cpp: In member 
function ‘bool ocu::NetCDFGrid3DWriter::open(const char*, int, int, int, 
float, float, float)’:
/home/marcel/Desktop/opencurrent/src/ocustorage/gridnetcdf.cpp:204: error: 
‘NC_NETCDF4’ was not declared in this scope
/home/marcel/Desktop/opencurrent/src/ocustorage/gridnetcdf.cpp: In member 
function ‘bool ocu::NetCDFGrid3DWriter::define_variable(const char*, nc_type, 
ocu::GridStaggering, float, float, float)’:
/home/marcel/Desktop/opencurrent/src/ocustorage/gridnetcdf.cpp:281: error: 
‘nc_def_var_deflate’ was not declared in this scope
/home/marcel/Desktop/opencurrent/src/ocustorage/gridnetcdf.cpp: In member 
function ‘bool ocu::NetCDFGrid3DReader::open(const char*)’:
/home/marcel/Desktop/opencurrent/src/ocustorage/gridnetcdf.cpp:492: error: 
‘nc_inq_varids’ was not declared in this scope

Original comment by MarcelSc...@googlemail.com on 19 Jan 2011 at 1:49

[GoogleCodeExporter]

I turned off NETCDF4 support and it compiles ok
It seems that cmake unable to find netcdf4 libraries

Original comment by zagoruy...@gmail.com on 19 Jan 2011 at 2:03

[GoogleCodeExporter]

Thanks for the quick reply! Where can I set the flag to disable netcdf?

I solved the above issue by compiling and installing a current version of 
netCDF and setting the cmake build parameters accordingly. Now I get the 
following error during the build process:

...

Scanning dependencies of target incompress
[ 65%] Building CXX object apps/CMakeFiles/incompress.dir/incompress.cpp.o
Linking CXX executable incompress
../ocustorage/libocustorage.a(gridnetcdf.cpp.o): In function 
`ocu::NetCDFGrid3DWriter::define_variable(char const*, int, 
ocu::GridStaggering, float, float, float)':
gridnetcdf.cpp:(.text+0x14cb): undefined reference to `nc_def_var_deflate'
../ocustorage/libocustorage.a(gridnetcdf.cpp.o): In function 
`ocu::NetCDFGrid3DReader::open(char const*)':
gridnetcdf.cpp:(.text+0x23b3): undefined reference to `nc_inq_varids'
gridnetcdf.cpp:(.text+0x2416): undefined reference to `nc_inq_varids'
collect2: ld returned 1 exit status

Original comment by MarcelSc...@googlemail.com on 19 Jan 2011 at 2:18

[GoogleCodeExporter]

You can set the variable
OCU_NETCDF4_SUPPORT_ENABLED
to 
FALSE
and it will disable all NetCDF support.

There is something messed up with the apt-get version of netcdf4.  As far as I 
can tell, it is not actually the version 4 api, which is what causes this issue.

The solution is to replace netcdf support with something like HDF5, but I 
haven't had time to do that yet.

-Jon

Original comment by jcohen.p...@gmail.com on 19 Jan 2011 at 2:34

[GoogleCodeExporter]

All right, just found the option in System.cmake. The build process now 
finished successfully. 

Thanks
Marcel

Original comment by MarcelSc...@googlemail.com on 19 Jan 2011 at 2:37

[GoogleCodeExporter]

Sorry, I meant to say that setting
OCU_NETCDF_ENABLED
to 
FALSE
disables all netcdf support.

You can also tell OpenCurrent to use the version 3.6 API, which should work, 
via the variable I (incorrectly) provided above:
OCU_NETCDF4_SUPPORT_ENABLED
to
FALSE

-Jon

Original comment by jcohen.p...@gmail.com on 19 Jan 2011 at 2:37

[GoogleCodeExporter]

Original comment by jcohen.p...@gmail.com on 21 Feb 2011 at 11:52

• Changed state: Done