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CambridgeCentreForProteomics / course_expression_proteomics

https://cambridgecentreforproteomics.github.io/course_expression_proteomics/
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Add heatmap #21

Closed Charl-Hutchings closed 4 months ago

Charl-Hutchings commented 4 months ago

Decision to add heatmap after volcano plot visualisation of stats results. Use pheatmap function to do so. Heatmap will be restricted to significantly changing proteins for the selected pairwise stats comparison (M-phase vs. desynchronised) and will show log norm abundances.

@TomSmithCGAT I started doing this, but I've never used the function before. Since you'll teach this part, I've left the code with minimal arguments -- you can add in whichever you wish to discuss. For the rest, I've added a link to where they can find more information on pheatmap and how to customise.

TomSmithCGAT commented 4 months ago

Thanks @Charl-Hutchings. I'm working on the stats on a separate branch, so probably best if we avoid both working on that notebook together to avoid conflicts. I'll pull in the latest commits to my branch.

TomSmithCGAT commented 4 months ago

Done. Seee #24