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CameronBodine / PINGMapper

Open-source interface for processing recreation-grade side scan sonar datasets and reproducibly mapping benthic habitat
https://cameronbodine.github.io/PINGMapper/
MIT License
39 stars 3 forks source link

IndexError: list index out of range #118

Closed Jdubs6 closed 3 months ago

Jdubs6 commented 3 months ago

Hey Cam! So sorry to bother you, I've just been running into a couple index issues when trying to process the Sonar data from the DAT files on GUI. While processing, the error looks like this:

Locating missing pings and adding NoData... Traceback (most recent call last): File "C:\Users\27imb\PythonPackages\PINGMapper\gui_main.py", line 286, in read_master_func(**params) File "C:\Users\27imb\PythonPackages\PINGMapper\src\main_readFiles.py", line 751, in read_master_func rowsToProc.append((rowsToProc[-1][-1], rowCnt))


IndexError: list index out of range

It then kicks me back to the standard command line without outputting the jpg. The software does create a folder with "logs" and "meta" data, with excel spreadsheets and txt files. I am using a DAT file called "Rec00008" with a folder also named "Rec00008" that includes the SON and IDX files. 

Additionally, while testing the PINGMapper software, this warning shows up: 

WARNING:tensorflow:From C:\Users\27imb\miniconda3\envs\ping\Lib\site-packages\tf_keras\src\losses.py:2976: The name tf.losses.sparse_softmax_cross_entropy is deprecated. Please use tf.compat.v1.losses.sparse_softmax_cross_entropy instead.

This could be attributing to the index error shown earlier. 

Hope this is enough information, let me know if there's anything else I need to provide! I've attached a few screenshots of the issues as well. Thanks for the help, have a great day! 

JW
CameronBodine commented 3 months ago

Hi! Sorry for the issue. Can you attach the two log files? And can you send a link where I can download the problematic recording?

CameronBodine commented 3 months ago

Also, the tf.losses.sparse_softmax_cross_entropy is just a warning and won't be causing the issue. I think it is something I need to report for another package. But I can look into that.

Jdubs6 commented 3 months ago

Anaconda Prompt (miniconda3).txt

Screenshot 2024-06-07 104631

Here's the link to the problematic files: https://drive.google.com/drive/folders/18Q5P4bpvKaWBLiZ2H2uMvJLHzfBblGNw?usp=sharing

I've also attached a txt file for the chat log and my settings for the GUI I used. let me know if you need anything else!

CameronBodine commented 3 months ago

The locate and flag missing pings workflow has been encountering more and more issues. Unchecking that option will allow you to process the recording. Let me know if this fixes the problem and I will close this issue.

Jdubs6 commented 3 months ago

It looks like the errors are gone!! I wanted to ask, it seems that GUI exported the sonar files as "meta" files. Is there a recommended way to view those files?

CameronBodine commented 3 months ago

Awesome! I will close.

I wanted to ask, it seems that GUI exported the sonar files as "meta" files. Is there a recommended way to view those files?

The .meta files are for PING-Mapper to properly run. You should have other folders in the project folder with rectified imagery, etc. You can set up a Zoom with me if you want to step through any of the outputs.

Jdubs6 commented 3 months ago

Ah, I gotcha. I figured out how to get the data in jpg form! Thanks so much for all the help man, I really appreciate it!!