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CameronBodine / PINGMapper

Open-source interface for processing recreation-grade side scan sonar datasets and reproducibly mapping benthic habitat
https://cameronbodine.github.io/PINGMapper/
MIT License
42 stars 3 forks source link

Install Update Issues #124

Open Dabbler23 opened 1 week ago

Dabbler23 commented 1 week ago

Describe the bug

Hi. Probably user error more than a bug. I was able to install version 1 fine and the small test data ran fine. However, I pushed my luck and tried to follow the Update Installation instructions and now cannot run the test data.

To Reproduce

Steps to reproduce the behavior: Please see screen grabs

  1. Go to '...'
  2. Click on '....'
  3. Scroll down to '....'
  4. See error

Expected behavior

Small test data set to be processed

Screenshots

If applicable, add screenshots to help explain your problem. image image

Desktop (please complete the following information):

Dell Laptop, 64-bit, Windows 11 Home

Additional context

Unfortunately I'm a complete newbie with respect to Miniconda and command prompts. As I mentioned, my initial install seemed to work fine with the test data, so I'd be quite happy just to uninstall everything and start again if that is an easier option?? But I don't know how to uninstall! Thanks very much for your help, and great tool by the way, can't wait to run some of my own sss imagery through it. Cheers

CameronBodine commented 1 week ago

That's a strange one! Why don't you try re-installing the conda environment, since it seems to be a tensorflow issue. Try the steps below and report back:

  1. Make sure ping environment is deactivated by running conda deactivate.
  2. Remove the environment with conda remove -n ping --all
  3. Clean up unused packages with conda clean --all
  4. Then reinstall the environment starting at Step 8 Make sure the terminal is in the PINGMapper directory (step 7)
Dabbler23 commented 6 days ago

Hey Cameron Thanks so much for the swift reply. I tried what you suggested and it worked a treat! Have just processed my first transect data, collected yesterday, and super happy. Image attached. I did get an error message (log recorded) showing the substrate pick had not worked. But I'll have a bit of a play first as I may have got some of the inputs wrong (this is literally my first attempt at processing). For your interest, we're looking at associating fish telemetry data with the sonagarms. I guess we'll see the tagged fish hanging around areas like timber and rock bars etc. Time will tell. Again, thank you very much for your help, and for making this program available. Best regards Sean

On Sun, Oct 20, 2024 at 12:09 AM Cameron Bodine @.***> wrote:

That's a strange one! Why don't you try re-installing the conda environment, since it seems to be a tensorflow issue. Try the steps below and report back:

  1. Make sure ping environment is deactivated by running conda deactivate.
  2. Remove the environment with conda remove -n ping --all
  3. Clean up unused packages with conda clean --all
  4. Then reinstall the environment starting at Step 8 https://cameronbodine.github.io/PINGMapper/docs/gettingstarted/Installation.html#step-8 Make sure the terminal is in the PINGMapper directory (step 7)

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