(PyMyoVent) H:\cardiorenalmodel\PyMyoVent-master\Python_code>python PyMyoVent.py run_batch ../demos/getting_started/base_sim/batch_base_sim.json
Initialising single_ventricle_circulation from H:\cardiorenalmodel\PyMyoVent-master\Python_code..\demos\getting_started\base_sim\sim_input/model.json on thread_id 0
Full dump mode, writing 40000 time-points
Thread_id[0]: Sim time (s): 0 0% complete
{}
Traceback (most recent call last):
File "PyMyoVent.py", line 193, in
PyMyoVent_main()
File "PyMyoVent.py", line 30, in PyMyoVent_main
run_batch(sys.argv[2])
File "PyMyoVent.py", line 90, in run_batch
worker(batch_jobs[0], 0)
File "PyMyoVent.py", line 119, in worker
sim_results_file_string=job['sim_results_file_string'])
File "H:\cardiorenalmodel\PyMyoVent-master\Python_code\single_ventricle_circulation\single_ventricle_circulation.py", line 328, in run_simulation
self.implement_time_step(time_step)
File "H:\cardiorenalmodel\PyMyoVent-master\Python_code\single_ventricle_circulation\single_ventricle_circulation.py", line 548, in implement_time_step
self.so.dump_rates_file()
File "H:\cardiorenalmodel\PyMyoVent-master\Python_code\sim_options\sim_options.py", line 175, in dump_rates_file
print('Writing rates to: %s' % self.data['rates_file_string'])
KeyError: 'rates_file_string'
Thank you very much for your packages. I have a basic question regarding the demo. Would you please help me to solve it?
I followed the installation and demo from here, https://campbell-muscle-lab.github.io/PyMyoVent/pages/demos/getting_started/base_sim/base_sim.html
(PyMyoVent) H:\cardiorenalmodel\PyMyoVent-master\Python_code>python PyMyoVent.py run_batch ../demos/getting_started/base_sim/batch_base_sim.json Initialising single_ventricle_circulation from H:\cardiorenalmodel\PyMyoVent-master\Python_code..\demos\getting_started\base_sim\sim_input/model.json on thread_id 0 Full dump mode, writing 40000 time-points Thread_id[0]: Sim time (s): 0 0% complete {} Traceback (most recent call last): File "PyMyoVent.py", line 193, in
PyMyoVent_main()
File "PyMyoVent.py", line 30, in PyMyoVent_main
run_batch(sys.argv[2])
File "PyMyoVent.py", line 90, in run_batch
worker(batch_jobs[0], 0)
File "PyMyoVent.py", line 119, in worker
sim_results_file_string=job['sim_results_file_string'])
File "H:\cardiorenalmodel\PyMyoVent-master\Python_code\single_ventricle_circulation\single_ventricle_circulation.py", line 328, in run_simulation
self.implement_time_step(time_step)
File "H:\cardiorenalmodel\PyMyoVent-master\Python_code\single_ventricle_circulation\single_ventricle_circulation.py", line 548, in implement_time_step
self.so.dump_rates_file()
File "H:\cardiorenalmodel\PyMyoVent-master\Python_code\sim_options\sim_options.py", line 175, in dump_rates_file
print('Writing rates to: %s' % self.data['rates_file_string'])
KeyError: 'rates_file_string'