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CanDIG
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clinical_ETL_code
A library to convert clinical data in csv format into json documents for CanDIG ingestion
GNU Lesser General Public License v3.0
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fix mapping functions for surgeries in mapping template
#38
mshadbolt
closed
1 year ago
3
DIG-1346: distinguish between errors and warnings
#37
daisieh
closed
1 year ago
2
DIG-1344: make sure no dup IDs in schemas
#36
daisieh
closed
1 year ago
2
DIG-1325: Don't add required_but_missing fields to failure list
#35
daisieh
closed
1 year ago
0
added single_map helper function
#34
yavyx
closed
1 year ago
0
Hotfix for treatment_type missing
#33
daisieh
closed
1 year ago
5
DIG-1285 redux: forgot latest bits in moh_template
#32
daisieh
closed
1 year ago
0
DIG-1285: check for diffs in moh_template
#31
daisieh
closed
1 year ago
0
Increase python version
#30
mshadbolt
closed
1 year ago
0
Tiny fixes that were missed before
#29
daisieh
closed
1 year ago
0
DIG-1140: ETL outputs missing clinical data summary
#28
daisieh
closed
1 year ago
2
Mappings over multiple sheets
#27
daisieh
closed
1 year ago
0
DIG-1247: Check that submitter_specimen_id refers to a valid specimen
#26
daisieh
closed
1 year ago
0
HOTFIX: Missing format string
#25
justin-ys
closed
1 year ago
0
DIG-1261: Fix indexing
#24
daisieh
closed
1 year ago
2
Validate coverage separate function
#23
justin-ys
closed
1 year ago
0
Hotfix: handle CSVConvert correctly for new template from #21
#22
daisieh
closed
1 year ago
1
DIG-1267, DIG-1268
#21
daisieh
closed
1 year ago
1
DIG-1079, DIG-1226: validate ETL beyond jsonschema
#20
daisieh
closed
1 year ago
1
Convert to package
#19
justin-ys
closed
11 months ago
1
change license to lgpl-3
#18
kcranston
closed
1 year ago
0
DIG-1195: indexed_on is now a function; refactoring as well
#17
daisieh
closed
1 year ago
1
DIG-1152: Validate output file against schema using jsonschema
#16
daisieh
closed
1 year ago
2
DIG-1194: don't map .id properties into template
#15
daisieh
closed
1 year ago
0
Bug fixes for the MoH model
#14
daisieh
closed
1 year ago
6
DIG-1045: First pass at MoH model
#13
daisieh
closed
1 year ago
12
Mohpacket instead of mcodepacket template generation
#12
daisieh
closed
1 year ago
1
Get moh schema
#11
kcranston
closed
1 year ago
1
[WIP] generate template from MoH schema
#10
kcranston
closed
1 year ago
1
use sheet lists in manifest to filter input files / sheets
#9
kcranston
closed
5 months ago
0
pip installing wrong version of katsu dependencies
#8
kcranston
closed
10 months ago
1
Separate template code
#7
kcranston
closed
1 year ago
0
Remove nulls from mapping
#6
daisieh
closed
2 years ago
1
Complex references to sheets and fields
#5
daisieh
closed
2 years ago
1
Coverage tool
#4
daisieh
closed
2 years ago
2
Test mapping
#3
daisieh
closed
2 years ago
1
add Katsu commit id to template
#2
daisieh
closed
2 years ago
0
Based on manifest, add indexes to specific sheets
#1
daisieh
closed
2 years ago
0
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