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CancerRxGene
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gdsctools
Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
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new features for MoBEM Maker
#144
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elisabeth-chen
opened
8 years ago
elisabeth-chen
commented
8 years ago
Liz:
[x] finish writing filter code
[x] add matrix creation function
[x] make filter code into class
[x] add drug download + conversion module
[ ] integrate fetch_gdsc_data, annotate_gene and filter_genes into clear work flow
[x] make flowchart
[ ] discuss with Mathew to decide final naming convention and required user input
[x] create documentation + tutorial
Thomas:
[x] add tests
[ ] use stringiu to read excel into memory
cokelaer
commented
8 years ago
changes planned for v0.16.1
[ ] instead of filling NA with "", we drop the rows. In any case, we do want to end up with genes or tissues that are unknown and set to empty strings.
[ ] Not sure what plot_alterations_per_cellline is suppose to do ?
Liz:
Thomas: