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CancerRxGene / gdsctools

Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
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No win-64 gdsctools on bioconda? #174

Open pgreninger opened 6 years ago

pgreninger commented 6 years ago

I followed the conda installation instructions and received an error: package missing in curent win-64 channels: -gdsctools Searching conda for gdsctools returns bioconda/gdsctools for platforms linux-64 and osx-64 but no win-64.

I'm not sure if other Windows users have experienced the same problem but pip install gdsctools choked on numpy, scipy and statsmodels installations. After several false starts I used conda to install numpy, scipy and statsmodels then pip to install gdsctools.

cokelaer commented 6 years ago

GDSCTools is available on bioconda but the anaconda framework only supports linux and macosx hence the first error (package missing in current win-64). Consequently, windows users have to install GDSCTools using the standard pip command.

I believe that you hybrid method (install gdsctools dependencies) and then gdsctools from pip is the correct way to proceed indeed.