I think it would be great to have another notebook that demonstrates how SCOTIA plays with other popular tools and resources for single-cell and spatial analysis in Python.
At the very least this would demonstrate how to carry out SCOTIA starting from spatial transcriptomics data stored in an anndata object. On the other hand, this could demonstrate how to carry out SCOTIA based on ligand-receptor pairs obtained from the popular omnipath database.
Step 2 could then also show off how to interoperate with other components of the scverse for spatial data analysis such as squidpy and SpatialData.
I think it would be great to have another notebook that demonstrates how SCOTIA plays with other popular tools and resources for single-cell and spatial analysis in Python.
At the very least this would demonstrate how to carry out SCOTIA starting from spatial transcriptomics data stored in an anndata object. On the other hand, this could demonstrate how to carry out SCOTIA based on ligand-receptor pairs obtained from the popular omnipath database.
Step 2 could then also show off how to interoperate with other components of the scverse for spatial data analysis such as squidpy and SpatialData.