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CapraLab / pdbmap

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Replace Bio:pairwise2 with Pairwise Aligner in PDBMapAlignment.py #47

Open ChrisMoth opened 1 year ago

ChrisMoth commented 1 year ago

pairwise2 is deprecated.

Docs don't look too bad - but note that the subst matrix architecture of Biopython has been changing as well.

https://biopython.org/docs/1.76/api/Bio.Align.html?highlight=pairwisealigner#Bio.Align.PairwiseAligner