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Add MANE cross-references #48

Open ChrisMoth opened 6 months ago

ChrisMoth commented 6 months ago

MANE cross-references link the human genome to transcript databases in a new and convincing manner https://www.ncbi.nlm.nih.gov/refseq/MANE/

For the pipeline, the MANE cross-references are mined from the text format uniprot_sprot.dat.gz, or its human-only subset as created by DOWNLOAD_uniprot.bash (see pipeline_download_scripts repository at github)

As the VUStruct pipeline evolves, we expect to increasingly integrate these cross-references as preferred over the uniprot assigned cross-references

ChrisMoth commented 5 months ago

I have downloaded the isoform.io v1.3 models to /dors/capra_lab/data/isoform.io Also there is a cross-reference .csv file.