CardiacModelling fitting-notebooks issues

CardiacModelling / fitting-notebooks

Examples of parameter estimation in cardiac cell electrophysiology using Myokit and PINTS.

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Finish artefact sims notebook (nr 3)

#41 MichaelClerx opened 1 month ago
0
Artefacts branch

#40 MichaelClerx opened 1 year ago
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Tiny change for test PR.

#39 MichaelClerx closed 1 year ago
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Working with real data notebooks (wip)

#38 MichaelClerx closed 1 year ago
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Change "- NB" to " (view)"

#37 MichaelClerx closed 2 years ago
1
Fixed big-fitting tutorial.

#36 MichaelClerx closed 3 years ago
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Adding tests

#35 MichaelClerx closed 3 years ago
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Big fitting notebook uses old transformation code

#34 MichaelClerx closed 3 years ago
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Add a requirements.txt

#33 MichaelClerx closed 3 years ago
1
Add a bit more about tmux use to the "big fitting" tutorial

#32 MichaelClerx opened 3 years ago
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I29 transformation

#31 chonlei closed 3 years ago
1
Add bit on boundaries for models with fast & slow inactivation

#30 MichaelClerx opened 3 years ago
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Update transformations chapter to use new pints functionality

#29 MichaelClerx closed 3 years ago
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Add example of prior for two similar gates

#28 MichaelClerx closed 3 years ago
1
Add "HH model background" chapter

#27 MichaelClerx closed 3 years ago
1
AP Model fitting

#26 MichaelClerx opened 4 years ago
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Basic fit "Choosing an error measure" --> Move to real data or delete

#25 MichaelClerx closed 4 years ago
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Text links: only use for wiki and web

#24 MichaelClerx closed 4 years ago
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Unidentifiability for ion channel models: Re-use wires example?

#23 MichaelClerx closed 3 years ago
1
Chapter: Log-transforms for AP fitting

#22 MichaelClerx opened 4 years ago
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Temperature dependence?

#21 chonlei closed 4 years ago
1
Make sure python documentation links are all to version 3

#20 MichaelClerx closed 4 years ago
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Link for Beattie et al is wrong?

#19 MichaelClerx closed 4 years ago
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Units in equations

#18 MichaelClerx closed 4 years ago
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Consistent colours throughout

#17 MichaelClerx closed 4 years ago
1
Rename repo

#16 MichaelClerx closed 4 years ago
3
Chapter: Tiny hint at GPU simulation

#15 MichaelClerx closed 3 years ago
2
Reduce amount of transition state theory stuff

#14 MichaelClerx closed 4 years ago
1
Chapter: Reliability (repeats fits etc)

#13 MichaelClerx closed 2 years ago
1
Add chapter on voltage errors etc., using Chon's model

#12 MichaelClerx closed 4 years ago
1
Standard error stuff

#11 MichaelClerx closed 4 years ago
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Link to 4 ways

#10 MichaelClerx closed 4 years ago
0
Reasons for log-transformation

#9 chonlei closed 4 years ago
6
Chapter: Fitting to AP with kinetics discrepancies

#8 chonlei opened 4 years ago
1
Chapter: AP fitting

#7 MichaelClerx closed 4 years ago
0
Write big-fitting chapter

#6 MichaelClerx closed 4 years ago
0
Chapter: Working with real data

#5 MichaelClerx opened 4 years ago
3
Write transformations chapter

#4 MichaelClerx closed 4 years ago
0
Write starting points chapter

#3 MichaelClerx closed 4 years ago
0
Finish boundaries chapter

#2 MichaelClerx closed 4 years ago
0
Wording "rate coefficients"

#1 MichaelClerx closed 4 years ago
1