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CarragherLab / cptools2

Running cellprofiler on eddie3 / SGE clusters
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Make script at the end to detect failed jobs #11

Open Swarchal opened 6 years ago

Swarchal commented 6 years ago

Can use qacct -j $job_name and then search for failed or any exit_status != 0, and return the task ID.

This will be a separate script that runs after all the analysis tasks have ran.

Swarchal commented 6 years ago

Should probably use the Qacct class from scissorhands/check_output.