When running DAWG on large datasets, if the user does not specify the max insertion or deletion parameter for Indels a default value of 16000 will be chosen (from dawg/details/dawgma.xmh).
Suggested fix:
Lower the default value or give it some indicator that the max/min indel parameters must be computed (most likely from the indel_params_* list).
Add a unit test to verify params are set correctly through the dawg::ma
Another test to verify a large set of parameters are processed (efficiency and accurateness)
zmertens
commented
7 years ago
When running DAWG on large datasets, if the user does not specify the max insertion or deletion parameter for Indels a default value of 16000 will be chosen (from
dawg/details/dawgma.xmh).Suggested fix:
indel_params_*list).dawg::ma