ADD: initialisation_mortality_baranov process with unittest
ADD: mortality_hybrid process (#250) that follows the recommended option in stock synthesis.
ADD: Mortality class in the process hierarchy. This was done to generalise mortality specific observations. Previously we had to dynamic cast specific mortality processes. By adding an in-between class we can have an mortality observation access multiple mortality process types.
CHG: report execute during intialisation from Model.cpp to InitialisationPhases/Manager.cpp. This will allow us to report quantities in between initialisation phases.
FIX: profiling with multiple same parameters
Solve issue #389
DEL: TestModel output from repository add to gitignore so they are not included in future commits.
FIX: AdressableTransformations (parameter transformations) when addressable is a vector. indexing starts at 1 (R-style) but was defaulting to C++ causing an misspecifed index.
UPD: usermanual
ADD: Test Case for SCI #399 using simulated data
ADD:
initialisation_mortality_baranovprocess with unittest ADD:mortality_hybridprocess (#250) that follows the recommended option in stock synthesis. ADD: Mortality class in the process hierarchy. This was done to generalise mortality specific observations. Previously we had to dynamic cast specific mortality processes. By adding an in-between class we can have an mortality observation access multiple mortality process types. CHG: report execute during intialisation from Model.cpp to InitialisationPhases/Manager.cpp. This will allow us to report quantities in between initialisation phases. FIX: profiling with multiple same parameters Solve issue #389 DEL: TestModel output from repository add to gitignore so they are not included in future commits. FIX: AdressableTransformations (parameter transformations) when addressable is a vector. indexing starts at 1 (R-style) but was defaulting to C++ causing an misspecifed index. UPD: usermanual ADD: Test Case for SCI #399 using simulated data