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Cassie07 / Review_Molecular_profile_prediction_GNN

[The Lancet Digital Health, MICCAI2020 Oral] The official code of "Spatially-aware Graph Neural Networks and Cross-level Molecular Profile Prediction in Colon Cancer Histopathology: A Retrospective Multicentre Cohort Study"
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Help!~ #1

Closed 1633146782 closed 11 months ago

1633146782 commented 1 year ago

Hello, I ran into difficulties when running Data preprocessing. Could you please provide me with the data in terms of omics? Thank you

Cassie07 commented 1 year ago

Hello, I ran into difficulties when running Data preprocessing. Could you please provide me with the data in terms of omics? Thank you

Hello! You can download the omics-relevant data from cBioPortal (https://www.cbioportal.org/datasets) and generate your own molecular profile alteration labels. For example, if the patient has a KRAS mutation record, you can assign the label as 1; otherwise, you can assign it as 0.