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CatalogueOfLife / backend

Complete backend of COL ChecklistBank
Apache License 2.0
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StringIndexOutOfBoundsException thrown in `ScientificNameSimilarity.similarity` #1337

Closed djtfmartin closed 3 months ago

djtfmartin commented 3 months ago

Noticed in the logs when running NameUsageMatchIndexer

java.lang.StringIndexOutOfBoundsException: String index out of range: 0
    at java.base/java.lang.StringLatin1.charAt(StringLatin1.java:48)
    at java.base/java.lang.String.charAt(String.java:1512)
    at life.catalogue.matching.similarity.ScientificNameSimilarity.similarity(ScientificNameSimilarity.java:64)
    at life.catalogue.matching.similarity.ScientificNameSimilarity.getSimilarity(ScientificNameSimilarity.java:42)
    at life.catalogue.matching.MatchingService.nameSimilarity(MatchingService.java:1218)
    at life.catalogue.matching.MatchingService.queryStrict(MatchingService.java:802)
    at life.catalogue.matching.MatchingService.match(MatchingService.java:870)
    at life.catalogue.matching.MatchingService.matchByClassification(MatchingService.java:517)
    at life.catalogue.matching.MatchingService.match(MatchingService.java:294)
    at life.catalogue.matching.MatchController.matchV2(MatchController.java:230)
    at jdk.internal.reflect.GeneratedMethodAccessor105.invoke(Unknown Source)
    at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.base/java.lang.reflect.Method.invoke(Method.java:568)
    at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:259)
    at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:192)
    at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:118)
    at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:920)
    at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:830)
    at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:87)
    at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:1089)
    at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:979)
    at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:1014)
    at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:903)
    at jakarta.servlet.http.HttpServlet.service(HttpServlet.java:564)
    at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:885)
    at jakarta.servlet.http.HttpServlet.service(HttpServlet.java:658)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:205)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:149)
    at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:174)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:149)
    at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:100)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:174)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:149)
    at org.springframework.web.filter.FormContentFilter.doFilterInternal(FormContentFilter.java:93)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:174)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:149)
    at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:201)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:116)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:174)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:149)
    at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:167)
    at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:90)
    at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:482)
    at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:115)
    at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:93)
    at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74)
    at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:344)
    at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:391)
    at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:63)
    at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:896)
    at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1744)
    at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:52)
    at org.apache.tomcat.util.threads.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1191)
    at org.apache.tomcat.util.threads.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:659)
    at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:63)
    at java.base/java.lang.Thread.run(Thread.java:833)`