Closed mdoering closed 1 year ago
please add also orcid 0000-0001-7209-9271 for stephen cairns
The wrong author order seems to apply for most WoRMS metadata
As you can see, in the version of 2023-05-01, this has been fixed
editors:
- { givenName: Bert, familyName: Hoeksema, email: bert.hoeksema@naturalis.nl, orcid: 0000-0001-8259-3783 }
- { givenName: Stephen, familyName: Cairns, email: cairnss@si.edu }
We'll add the ORCID
Excellent! Will this also be true for the other WoRMS datasets in ChecklistBank?
Yes, normally it should
Thanks Bart, I hope this resolves the authorship issue with WoRMS data sets in COL.
@bart-v just checking two datasets https://www.checklistbank.org/dataset/1193/about and https://www.checklistbank.org/dataset/1196/about The authorships look good, but I notice that the names of the persons are in the editor field and their organisations are in the contributor field. Just so you know, both person and ORCID and organisation can be put into the same field: https://www.checklistbank.org/catalogue/3/metadata
Yes, this can probably be improved
@bart-v we checked all WoRMS datasets metadata at ChecklistBank vs. their citations at marinespecies.org and found mismatch in 13 datasets. You can find them in the file attached, where differences are highlighted in bold letters. Worms metadata check 20230510.xlsx
please let us know if you have any comments.
Thanks, we'll look into this
How can there be bold letters in a CSV? Can you provide an XLS or similar?
Hi Bart! Here are the details of the mismatch:
Nemertea: Worms citation has the following authors Norenburg, J.; Gibson, R.; Herrera Bachiller, A.; Strand, M. , while in CLB has one more author Artois, T.
, Norenburg, J., Gibson, R., Herrera Bachiller, A., & Strand, M.
Copepoda: Worms citation has the following authors Walter, T.C.; Boxshall, G. , while in CLB has many more Walter, T. C., Boxshall, G., Bernot, J., Böttger-Schnack, R., Cornils, A., Costa Corgosinho, P. H., Defaye, D., Di Capua, I., Dippenaar, S., Figueroa, D., Gaviria-Melo, S., Gómez-Noguera, S. E., Ho, J.-s., Ivanenko, V. (., Kouwenberg, J., Piasecki, W., Suárez-Morales, E., Tang, D., & Uribe-Palomino, J.
Foraminifera: Worms citation has the following authors Hayward, B.W.; Le Coze, F.; Vachard, D.; Gross, O. , while in CLB has one more authorConsorti, L.
, Hayward, B. W., Le Coze, F., Vachard, D., & Gross, O.
Echinoidea: Worms citation has the following authors Kroh, A.; Mooi, R. , while in CLB has many more**Altenburger, K., Bandesha, F., Bronstein, O., Ducarme, F., Forstner, M., Grun, T. B., Krapf, A., Martínez-Melo, A., Miskelly, A., Mongiardino Koch, N., Steger, J., Ziegler, A., Sigda, L.
, Kroh, A., Mooi, R., & Saucède, T.
MilliBase: Worms citation has the following authors Sierwald, P.; Spelda, J. , while CLB has many more **Sierwald, P., Spelda, J., Barber, A., Decker, P., Akkari, N., Antić, D. Z., Barbosa, J. P., Bonato, L., Bouzan, R., Bueno-Villegas, J., Enghoff, H., Iniesta, L. F. M., Marek, P., Martínez-Muñoz, C. A., Reip, H., Shear, W., Short, M., Simmons, E., Stoev, P., et al.
polychaeta: Worms citation has the following authors Read, G.; Fauchald, K. , while CLB has many more Read, G., Fauchald, K., Carrera-Parra, L., Doner, S., Eibye-Jacobsen, D., Glasby, C., Glover, A. G., Harris, L., Paxton, H., Salazar-Vallejo, S., ten Hove, H., Zanol, J., Arvanitidis, C., Siciński, J., Londoño-Mesa, M., Reuscher, M., Fernández-Rodríguez, V., Nealova, L., & Wilson, R.
Ostracoda: Worms citation has the following authors Brandão, S.N.; Antonietto, L.S; Nery, D.G.; Santos, S.G.; Karanovic, I. , while CLB has many more Brandão, S., Antonietto, L. S., Nery, D. G., Santos, S. G., Karanovic, I., Camilo de Oliveira, J. P., Pereira, J. d. S., & Praxedes, R. A
.
Amphipoda: Worms citation has the following authors Horton, T.; Lowry, J.; De Broyer, C.; Bellan-Santini, D.; Copilaș-Ciocianu, D.; Corbari, L.; Costello, M.J.; Daneliya, M.; Dauvin, J.-C.; Fišer, C.; Gasca, R.; Grabowski, M.; Guerra-García, J.M.; Hendrycks, E.; Hughes, L.; Jaume, D.; Jazdzewski, K.; Kim, Y.-H.; King, R.; Krapp-Schickel, T.; LeCroy, S.; Lörz, A.-N.; Mamos, T.; Senna, A.R.; Serejo, C.; Souza-Filho, J.F.; Tandberg, A.H.; Thomas, J.D.; Thurston, M.; Vader, W.; Väinölä, R.; Vonk, R.; White, K.; Zeidler, W , while in CLB there is a difference on the second and third authors order Horton, T., De Broyer, C., Lowry, J.
, Bellan-Santini, D., and there are two more authors at the end Desiderato, Andrea
and Rewicz, Tomasz
.
Gastrotricha: Worms citation has the following authors Todaro, A.; d'Hondt, J-L.
, while CLB only has one Todaro, A.
Placozoa: Worms citation has the following authors Schierwater, B.; Eitel, M.; DeSalle, R. , while CLB has some more Schierwater, B., Osigus, H.-J.
, DeSalle, R., & Eitel, M
.
For the following two dataset CLB has ha detailed list of authors but WoRMS has a more general cite, to make such a change you need to tremove all authors and set the single editor with the name of the database for example"MolluscaBase"
MolluscaBase:
Nemys:
We couldn't check Brachiopoda as it is mising on the GSDs list https://www.marinespecies.org/subregisters.php
Hi @bart-v ! Next Annual COL Checklist will be release on June, please let us know if you need some extra hands to update the citation of the remaining datasets for the next dump of WoRMS
Thanks, we'll manage
Hi Bart, we made a full review of the citation of the Jun version of all WORMS sources, most the differences we pointed out above have been addressed, however, we found some major an minor issues.
Major: significant differences on the editors information, those affecting the citation
Minor: slight differences between CLB and WoRMS in format of the citation, please just clarify if this is really a point to fix or not (to consider in future revisions).
Sources that have a range of dates on the original citation, but in CLB only one date can be added to the citation. In these cases we suggest to add this dates range on the abstract of each source:
Sources with slight differences on the authors initials:
Sources that in WoRMS have an specific URL and a DOI, but in CLB only have a DOI
WoRMS Hydrozoa WoRMS Ophiuroidea WoRMS Pycnogonida
Sources that have a general URL to https://www.marinespecies.org/ but on the original citation they have a more specific one:
It's hard to rely on a comment like this if I just check one answer and it's wrong... "Sources that have a general URL: MolluscaBase" = wrong
we didn't want to confuse you. In the specific case of Mollusca , here is the differerence, that we consider a minor issue, but still wanted to let you know:
how it is in WoRMS:
and how it is in CLB:
We provide this twice in yaml, but it's not used in COLDP
(...)
website: 'https://www.molluscabase.org'
citation: 'MolluscaBase eds. (2023). MolluscaBase. Accessed at https://www.molluscabase.org on 2023-06-01. doi:10.14284/448'
(...)
We can look at this later.
For now, we'll focus on the "editors" (Major issues reported by you) Thanks for this, we'll come back to this in the next days.
@bart-v following your comments by e-mail I already updated citations in CLB for 5 datasets as follows:
Cumacea: Metadata is visible now and NO CORRECTIONS were needed.
Polychaeta: citation was corrected to Read, G., & Fauchald, K. (2023). World Polychaeta Database (ver. (06/2023)). https://www.marinespecies.org/polychaeta
Brachyura: citation was corrected to Ng K.L., P., & Davie, P. (2023). World List of marine Brachyura (ver. (06/2023)). https://marinespecies.org/aphia.php?p=taxdetails&id=106673
Gastrotricha: citation was corrected to Todaro, A., & d’Hondt, J.-L. (2023). World Gastrotricha Database (ver. (06/2023)). https://marinespecies.org/aphia.php?p=taxdetails&id=2078
Brachiopoda: citation was corrected to WoRMS. (2023). World Brachiopoda Database (ver. (06/2023)). https://www.marinespecies.org/aphia.php?p=taxdetails&id=1803 Current license in CLB: CC-BY Christian Emig and his e-mail were deleted from the "Contact" field in CLB.
Corallimorpharia: citation was corrected to Daly, M., & Fautin, D. (2023). World List of Corallimorpharia (ver. (06/2023)). https://www.marinespecies.org/aphia.php?p=taxdetails&id=1362
Please remember that these changes are temporary and only work for this month up to the next WoRMS update to ChecklistBank.
One last update: since a few months we do have a WoRMS editor for Brachiopoda
So, the citation becomes: Verhoeff, T. (2023). World Brachiopoda Database (...)
Many tanks! I'll do preview release with all these changes at the end Wd, 2023-06-14. It will available online at https://preview.catalogueoflife.org/.
You all are very welcome to check this "proof".
The latest proof is ready for your checks: https://preview.catalogueoflife.org
Metadata for al WORMS datasets were updated and ready for the Annual release. However, detailed corrections will be done by the WORMS team in each matadata file for future versions.
The World List of Scleractinia has the editors in wrong order in the source archive provided by WoRMS: World List of Scleractinia
Hoeksema should be the first editor according to https://www.marinespecies.org/scleractinia/ The editors are also listed there wrongly though and only the citation is correct.
Access to the URL is restricted, here is the metadata: