Entiminae - 3i Curculio (id 1166): test report

[yroskov]

Subfamily Entiminae imported on dev 2021-05-17: https://data.dev.catalogueoflife.org/dataset/2141/classification

[yroskov]

Imported: 14529 spp (13483 in ac19)

[yroskov]

CLASSIFICATION https://data.dev.catalogueoflife.org/dataset/2141/classification

• [ ] There is one "empty" tribe in the Tree: Prypnini

TW: https://sfg.taxonworks.org/tasks/nomenclature/browse?taxon_name_id=729924

• [ ] There are "empty" genera in the Tree, for example (not all listed): Limalophus Scudder, 1893; TW: https://sfg.taxonworks.org/tasks/nomenclature/browse?taxon_name_id=723534 Sitonites Heer, 1864; TW: https://sfg.taxonworks.org/tasks/nomenclature/browse?taxon_name_id=723776 Ansorus Alonso-Zarazaga & Lyal, 1999; TW: https://sfg.taxonworks.org/tasks/nomenclature/browse?taxon_name_id=725040 Eudomus Scudder, 1893; TW: https://sfg.taxonworks.org/tasks/nomenclature/browse?taxon_name_id=728446 Promecodes Marshall, 1939; TW: https://sfg.taxonworks.org/tasks/nomenclature/browse?taxon_name_id=728457

Note: these names are flagged as "This name is valid/accepted" in TW Summary.

Checklistbank image:

[yroskov]

ISSUES (very clean!) https://data.dev.catalogueoflife.org/dataset/2141/issues

• [ ] Parsed Name Differs, 3 https://data.dev.catalogueoflife.org/dataset/2141/names?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&issue=parsed%20name%20differs&limit=50&offset=0

Polydrusus cylindrocollis: Gyllenhal, 1834	synonym of Polydrusus (Conocetus) bardus Gyllenhal, 1834
peneckei peneckei Reitter, 1894	synonym of Rhinomias gattereri (Stierlin, 1884)
quadricollis versicolor Faust, 1887	synonym of Sitona versicolor (Faust, 1887)

[yroskov]

Subfamily Entiminae imported on dev 2021-05-24: https://data.dev.catalogueoflife.org/dataset/2154/classification

• [ ] Imported: 13912 vs 14529 spp in previous ver (13483 in ac19)

• [x] Classification: looks OK (subfamily - tribe - subtribe - genus - species

• [x] Original combination: OK (i.e. repeated among CoL synonyms)

• [ ] Empty taxa: substantial number of "empty" genera in the Tree. Probably, the most impressive example is in the tribe Gonipterini Lacordaire, 1863:

[yroskov]

New version (2021-06-11) (subfamily Entiminae) at https://data.catalogueoflife.org/dataset/2316/classification

• [x] Imported: 13915 vs 13912 spp in previous ver (13483 in ac19)

• [x] Classification: tribes OK

• [x] Original combination: OK

• [ ] Synonyms:

• [ ] Empty taxa: Examples:

Limalophus Scudder, 1893 Sitonites Heer, 1864

tribe Gonipterini Lacordaire, 1863: https://data.catalogueoflife.org/dataset/2316/classification?taxonKey=627033

• [ ] Abbreviated genus name in original combinations? If yes, brackets are missing in consequent combinations. Example:

Polyteles uniformis Heller, 1932 (≡ G uniformis Heller, 1932) https://data.catalogueoflife.org/dataset/2316/taxon/625791

Polyteles inka Heller, 1932 (≡ G inka Heller, 1932) https://data.catalogueoflife.org/dataset/2316/taxon/625788

[yroskov]

EXPERIMENT ON DEV 2021-06-28

Project Curculio Assembly Dev, 2164: https://data.dev.catalogueoflife.org/catalogue/2164/assembly?assemblyTaxonKey=8b83ebfc-e2f9-446c-b004-afba7098126d

3i Curculio / 3iC: https://data.dev.catalogueoflife.org/dataset/2154/classification WTaxa / wtaxa dev: https://data.dev.catalogueoflife.org/dataset/2135/classification Assembled.

@gdower scripted blocking overlapped genera in WTaxa.

Synced.

So far these genera will need manual blocks: Hypsonotus (yr: left in 3i only), Apotomus (yr: 3 entries, of them 2 in 3i) Panscopus 2 entries Homaleptops 2 entries Cyphus yr: 2 entries Thaptogenius 2 entries Pachyrhynchus 3 entries, of them 2 in 3i, incl. species Pachyrhynchus [SPECIES NOT SPECIFIED] Elytrocheilus 2 entries Rhinomacer 2 entries in 3i Goniorhinus 2 entries Curculionites 2 entries in WTaxa Eurhinus 2 entries

For some reason Syringotypus (yr: left in 3i only) had a duplicate decision, so that might need review as well.

Results look good.

[yroskov]

The version of June was imported from localhost to the PROD 2021-06-28: https://data.catalogueoflife.org/catalogue/3/dataset/1166/classification.

• [x] Meatdata updated

ISSUES assessed

• [x] Multi Word Epithet, 13. Species with comment "[SPECIES NOT SPECIFIED]" were blocked in CoL. Example: Laparocerus (Laparocerus) [SPECIES NOT SPECIFIED] alticola Machado, 2016 https://data.catalogueoflife.org/catalogue/3/dataset/1166/workbench?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&issue=multi%20word%20epithet&limit=100&offset=0

• [x] Partially Parsable Name, 646. There are 646 synonyms with letter "s" between genus and species epithet (example, Lichenophagus s amplificatus Wollaston, 1865). Clearinghouse interpreted them as subspecies. Blocked in CoL

• https://data.catalogueoflife.org/catalogue/3/dataset/1166/workbench?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&issue=partially%20parsable%20name&limit=100&offset=0

[yroskov]

TASKS 2021-06-30

Resolved 2021-06-30:

[yroskov]

Synced 2021-06-30

[yroskov]

*3i Curculio of 0.32.2 / 2023-04-12**; imported 2023-04-12 from Geoff's laptop

• [x] Imported: 14300 spp (vs 13915 spp)
• [x] Metadata: version corrected 0.32.2 / 2023-04-12 -> Apr 2023 / 2023-04-12
• [x] Classification:
  subtribe Entiminae - all tribes OK - 12 genera outside tribes, 4 of them are empty (no spp)

There is empty subtribe Celeuthetina (in Celeuthetini).

There are empty genera inside tribes (full list): †Sitonites Heer, 1864 (in Anypotactini), †Limalophus Scudder, 1893 (in Byrsopagini), †Oligocryptus Carpenter, 1985 (in Eudiagogini), Prepodes Schoenherr, 1840 (in Eustylini), †Tenillus Scudder, 1893 (in Geonemini), Bryaehus Pascoe, 1870 & Minia Pascoe, 1883 (in Gonipterini), Evadodes Blackburn, 1896 (in Leptopiini), Deroconus Jekel, 1856 (in Lordopini), Myociphus Hustache, 1939 & Pterotropis Schoenherr, 1847 (in Naupactini), †Ophryastites Scudder, 1893 (in Ophryastini), Schauenbergia Osella, 1977 (in Pachyrhynchini), Aperitelus Hustache, 1939 & Strictoseneciobius Hustache, 1939 (in Peritelini), Epherina Pascoe, 1869 & †Evopes Scudder, 1893 (in Phyllobiini), †Sitonitellus Carpenter, 1985 (in Sitonini), †Palaeotanymecides Mani, 1947 (in Tanymecini), †Brachymycterus Heyden & Heyden, 1866 (in Typhlorhinini), and 4 empty genera outside of any tribe Deuterostrophus Jekel, 1875, Genavius Osella, 1983, Holcorhinosoma Voss, 1939, Leptorhinus Latreille, 1828.

• [x] Sector: BROKEN (in Sectors tool); rematched successfully (checked in Assembly): subfamily Entiminae
• [x] flag "extinct" = OK

ISSUES assessed 2023-04-13

• Wrong Monomial Case, 4 = BLOCKED for now: genus, synonym:
  †densepunctatus Haupt, 1956 species, synonyms: oxyops aberrans Lea, 1898
  peneckei peneckei Reitter, 1894 quadricollis versicolor Faust, 1887

• Multi Word Epithet, 5: Names with portion [species not specified] = BLOCKED https://www.checklistbank.org/catalogue/3/dataset/1166/workbench?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&issue=multi%20word%20epithet&limit=100&offset=0&reverse=false&sortBy=name

• Unparsable Authorship, 6: Names with authorstring Saunders &, 1855 = should it be Saunders & Jekel, 1855? https://www.checklistbank.org/catalogue/3/dataset/1166/workbench?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&issue=unparsable%20authorship&limit=100&offset=0

TASKS

• Broken decisions, 1186: rematch all = 1042 remain; all deleted

• Two different species?: Phyllobius (Alsus) farinosus (Motschulsky V., 1860) Phyllobius (Alsus) farinosus Motschulsky V., 1860

• Four species appear twice in the checklist: Laparocerus (Pecoudius) moyanus Machado, 2021 Pachyrhynchus notocruciatus Yoshitake, 2017 Pachyrhynchus yamianus Kano, 1929 Pantorhytes granulatus Heller, 1905

• Names (422 synonyms) with portion [GENUS NOT SPECIFIED] = BLOCKED (normal search in workbench)

Resolved 2023-04-13:

Synced 2023-04-13

[yroskov]

*3i Curculio of 0.32.2 / 2023-04-17**; re-imported 2023-04-17 from Geoff's laptop AFTER NIkolai's fixes

• [x] Imported: 14318 spp (vs 14300 spp)
• [x] Metadata: version corrected 0.32.2 / 2023-04-17 -> Apr 2023 / 2023-04-17
• [x] Classification: OK
• [x] Sector: OK, subfamily Entiminae
• [x] flag "extinct" is missing (@gdower, we need to fix this) = FIXED

TASKS

• Broken decisions, 11: all deleted

Synced 2023-04-17

[yroskov]

*3i Curculio of 0.32.3 / 2023-05-10**; imported 2023-05-10 from Geoff's laptop

• [x] Imported: 14368 spp (vs 14318 spp)

• [x] Metadata: version corrected 0.32.3 / 2023-05-10 -> May 2023 / 2023-05-10

• [x] Classification: OK

• [x] Sector: OK, subfamily Entiminae

• [x] flag "extinct"

• [x] Check for names with portion [GENUS NOT SPECIFIED] (403 synonyms = remain blocked; 107 bare names), [species not specified] (4 accepted spp, 1 synonym = remain blocked)

TASKS

• Broken decisions, 22: deleted all

Resolved 2023-05-11:

Synced 2023-05-11

[yroskov]

New title "Entiminae: World Entiminae Database"

Entiminae of 0.33.1 / 2023-07-13; imported 2023-07-13 from Geoff's laptop

• [x] Imported: 14368 spp (vs 14318 spp)

• [x] Metadata: short & full titles changed as "Entiminae: World Entiminae Database"; new authors added; version corrected 0.33.1 / 2023-07-13 -> Jul 2023 / 2023-07-13

• [x] Classification: OK

• [x] Sector: OK, subfamily Entiminae

• [x] flag "extinct"

• [x] Check for names with portions [GENUS NOT SPECIFIED], [species not specified]: OK

ISSUES assessed 2023-07-13

TASKS

• Broken decisions, 48: deleted all

Resolved 2023-07-13:

Synced 2023-07-13

[yroskov]

Entiminae of 0.34.1 / 2023-08-08; imported 2023-08-08 from Geoff's laptop

• [x] Imported: 14368 spp (vs 14318 spp)
• [x] Metadata: version corrected 0.34.1 / 2023-08-08 -> Aug 2023 / 2023-08-08
• [x] Classification: OK
• [x] Sector: OK, subfamily Entiminae
• [x] flag "extinct"
• [x] Check for names with portions [GENUS NOT SPECIFIED], [species not specified]: OK

TASKS

• Broken decisions, 13: deleted all

Resolved 2023-08-09:

Synced 2023-08-09

[yroskov]

• [x] New logo uploaded in CLB 2023-08-17:

• [x] Personal metadata updated between 2023-07-31 & 2023-08-11

[yroskov]

Entiminae of 0.34.3 / 2023-09-06; imported 2023-09-06 from Geoff's laptop

• [x] Imported: 14459 spp (vs 14368 spp)
• [x] Metadata: version corrected 0.34.3 / 2023-09-06 -> Sep 2023 / 2023-09-06
• [x] Classification: OK
• [x] Sector: OK
• [x] flag "extinct": OK
• [x] Check for names with portions [GENUS NOT SPECIFIED] = 83 new, [species not specified]: OK

TASKS

• Broken decisions, 10: all deleted
• 377 names (synonyms) without species epithet (e.g. Amphitmetus subsp. alticola Hustache, 1934; Babaultia subsp. collaris Voss, 1965; Barynotus subsp. alpicola Pesarini C, 2011) = all blocked. @gdower, is caused by us or original Entiminae data?

https://www.checklistbank.org/catalogue/3/dataset/1166/workbench?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&limit=990&offset=0&q=subsp.

Коля @omias

Resolved 2023-09-08:

Synced 2023-09-08

[gdower]

The 377 synonyms without species epithets is a data issue, findable in the TW project by searching for 'species not specified':

[Omias]

Hi, I'm currently fixing this issue. That is residual data from my old database remaining with incomplete field "original species". Hope it is to be accomplished by the next update at CoL Nikolai

On Tue, Sep 12, 2023 at 2:38 PM Geoff Ower @.***> wrote:

The 377 synonyms without species epithets is a data issue, findable in the TW project by searching for 'species not specified':

[image: image] https://user-images.githubusercontent.com/8573609/267428027-6b8aafa2-46a8-43b5-8506-a9395d4e82e6.png

— Reply to this email directly, view it on GitHub https://github.com/CatalogueOfLife/testing/issues/128#issuecomment-1716234738, or unsubscribe https://github.com/notifications/unsubscribe-auth/AQSCNRMXPST3FA2B6MVOD4LX2CTZ5ANCNFSM45AWNO7Q . You are receiving this because you were mentioned.Message ID: @.***>

[yroskov]

Entiminae of 0.34.5 / 2023-10-04; imported 2023-10-04 from Geoff's laptop

• [x] Imported: 14458 spp (vs 14459 spp)
• [x] Metadata: version corrected 0.34.5 / 2023-10-04 -> Oct 2023 / 2023-10-04
• [x] Classification: OK
• [x] Sector: OK
• [x] flag "extinct": OK
• [x] Check for names with portions [GENUS NOT SPECIFIED] = 0 new, [species not specified]: 0 new

TASKS

• Broken decisions, 430: deleted

Resolved 2023-10-05:

Synced 2023-10-05

[yroskov]

• [ ] Old logo appeared again in CLB (see: https://github.com/CatalogueOfLife/testing/issues/128#issuecomment-1682506997) @mdoering, do you know what might be happened with logo in CLB?

= FIXED, correct logo re-uploaded 2023-11-01

• [x] Personal metadata updated 2023-11-01: Contact Yunakov, Nikolai; new author First name: Cabras, Analyn

[mdoering]

I see a different green logo today. https://api.checklistbank.org/dataset/1166/logo?size=ORIGINAL

Also in the COL source: https://www.checklistbank.org/dataset/3/source/1166

[mdoering]

The last release indeed had the old logo though: https://www.checklistbank.org/dataset/3LR/source/1166 https://api.checklistbank.org/dataset/3LR/logo/source/1166?size=ORIGINAL

[mdoering]

Otherwise I cannot see any reason for the old logo to show up. The metadata of the last imported archive by geoff only has this (notice the wrong title):

title: Curculionidae version: 0.34.5 issued: '2023-10-04'

... and settings are to merge metadata, so anything else should remain as it was.

[yroskov]

Entiminae of 0.35.2 / 2023-11-08; imported 2023-11-09 from Geoff's laptop

• [x] Imported: 14479 spp (vs 14458 spp)
• [x] Metadata: version corrected 0.35.2 / 2023-11-08 -> Nov 2023 / 2023-11-08
• [x] Classification: OK
• [x] Sector: OK
• [x] flag "extinct": OK
• [x] Logo (not 3i): OK
• [x] Check for names with portions [GENUS NOT SPECIFIED] = 83 new, [species not specified]: 0 new = BLOCKING FAILED https://github.com/CatalogueOfLife/checklistbank/issues/1310

ISSUES assessed 2023-11-09

TASKS no issues

• Broken decision, 11: deleted

Synced 2023-11-09

[yroskov]

Entiminae of 0.36.0 / 2023-12-07; imported 2023-12-07 from Geoff's laptop

• [x] Imported: 14487 spp (vs 14479 spp)
• [x] Metadata: version corrected 0.36.0 / 2023-12-07 -> Dec 2023 / 2023-12-07
• [x] Classification: OK
• [x] Sector: OK
• [x] flag "extinct": OK
• [x] Logo (not 3i): OK
• [x] Check for names with portions [GENUS NOT SPECIFIED] = all blocked, 0 new, [species not specified]: 0 new

TASKS

• Broken decisions, 28: deleted

Resolved 2023-12-08:

Synced 2023-12-08

[yroskov]

• [ ] Incorrect DOI for monthly update of the World Entiminae Database #606 https://github.com/CatalogueOfLife/data/issues/606

[yroskov]

Entiminae of 0.37.0 / 2024-01-02; imported 2024-01-02 from Geoff's laptop

• [x] Imported: 14500 spp (vs 14487 spp)
• [x] Metadata: version corrected 0.37.0 / 2024-01-02 -> Jan 2024 / 2024-01-02
• [x] Classification: OK
• [x] Sector: OK
• [x] flag "extinct": OK
• [x] Logo (not 3i): OK
• [x] Check for names with portions [GENUS NOT SPECIFIED] = all blocked, 0 new, [species not specified]: 0 new
• [ ] DOI: incorrect, 10.48580/dfp3-3f8 points to Jun 2021 / 2021-06-28 = DELETED DOI in metadata & re-synced 2024-01-03

TASKS

• Broken decisions, 1: deleted
• Outdated decisions, 19: deleted

Resolved 2023-01-03:

Synced 2023-01-03

[yroskov]

Entiminae of 0.38.1 / 2024-02-06; imported 2024-02-06 from Geoff's laptop

• [x] Imported: 14520 spp (vs 14500 spp)
• [x] Metadata: version corrected0.38.1 / 2024-02-06 -> Feb 2024 / 2024-02-06
• [x] Classification: OK
• [x] Sector: OK
• [x] flag "extinct": OK
• [x] Logo (not 3i): OK
• [x] Check for names with portions [GENUS NOT SPECIFIED] = 69 new blocked, [species not specified]: 0 new. See https://github.com/CatalogueOfLife/backend/issues/1290#issuecomment-1944085343
• [ ] DOI: no

ISSUES assessed 2024-02-14

• [ ] Inconsistent Name, 4: incomplete names with portion var. var.. New TW Exporter ticket need to be open.

TASKS

• Broken decision, 1: deleted

Resolved 2024-02-14:

Synced 2024-02-14

[yroskov]

Entiminae of 0.39.0 / 2024-03-08; imported 2024-03-08 from Geoff's laptop

• [x] Imported: 14529 spp (vs 14520 spp)
• [x] Metadata: version corrected 0.39.0 / 2024-03-08 -> Mar 2024 / 2024-03-08
• [x] Classification: OK
• [x] Sector: OK
• [x] flag "extinct": OK
• [x] Logo (not 3i): OK
• [x] Check for names with portions [GENUS NOT SPECIFIED] = 0, [species not specified]: 0 new, 2 blocked.
• [ ] DOI: no

Metrics

ISSUES assessed 2024-03-19

TASKS = no new issues

Synced 2024-03-19

[yroskov]

Entiminae of 0.40.3 / 2024-04-18; imported 2024-04-18 from Geoff's laptop

• [x] Imported: 14530 spp (vs 14529 spp)
• [x] Metadata: version corrected 0.40.3 / 2024-04-18 -> Apr 2024 / 2024-04-18
• [x] Classification: OK
• [x] Sector: OK
• [x] flag "extinct": OK
• [x] Logo (not 3i): OK
• [x] Check for names with portions [GENUS NOT SPECIFIED] = 0, [species not specified]: 0 new, 2 blocked.
• [ ] DOI: no

Metrics

TASKS

• Broken decisions, 397 = deleted

Resolved 2024-04-19:

Synced 2024-04-19

[yroskov]

Entiminae of 0.41.0 / 2024-05-06; imported 2024-05-06 from Geoff's laptop

• [x] Imported: 14533 spp (vs 14530 spp)
• [x] Metadata: version corrected 0.41.0 / 2024-05-06 -> May 2024 / 2024-05-06
• [x] Classification: OK
• [x] Sector: OK
• [x] flag "extinct": OK
• [x] Logo (not 3i): OK
• [x] Check for names with portions [GENUS NOT SPECIFIED] = 0, [species not specified]: 0 new, 2 blocked.
• [ ] DOI: no

Metrics

TASKS

Resolved 2024-05-09:

Synced 2024-05-09

[yroskov]

Entiminae of 0.41.1 / 2024-06-03; imported 2024-06-03 from Geoff's laptop

• [x] Imported: 14534 spp (vs 14533 spp)
• [x] Metadata: version corrected 0.41.1 / 2024-06-03 -> Jun 2024 / 2024-06-03
• [x] Classification: OK
• [x] Sector: OK
• [x] flag "extinct": OK
• [x] Logo (not 3i): OK
• [x] Check for names with portions [GENUS NOT SPECIFIED] = 0, [species not specified]: 0 new, 2 blocked.
• [ ] DOI: no

Metrics

ISSUES

TASKS

• Broken decisions, 2 = deleted all

Resolved 2024-06-04:

Synced 2024-06-04

[yroskov]

Entiminae of 0.42.0 / 2024-07-05; imported 2024-07-05 from Geoff's laptop

• [x] Imported: 14608 spp (vs 14534 spp)
• [x] Metadata: version corrected 0.42.0 / 2024-07-05 -> Jul 2024 / 2024-07-05
• [x] Classification: OK
• [x] Sector: OK
• [x] flag "extinct": OK
• [x] Logo (not 3i): OK
• [x] Check for names with portions [GENUS NOT SPECIFIED] = 0, [species not specified]: 0 new, 2 blocked.
• [ ] DOI: no

Metrics

TASKS

• Broken decisions, 1 = deleted

Resolved 2024-07-16:

Synced 2024-07-16

[yroskov]

Entiminae of 0.43.1 / 2024-08-06; imported 2024-08-06 from Geoff's laptop

• [x] Imported: 14610 spp (vs 14608 spp)
• [x] Metadata: version corrected 0.43.1 / 2024-08-06 -> Aug 2024 / 2024-08-06
• [x] Classification: OK
• [x] Sector: OK
• [x] flag "extinct": OK
• [x] Logo (not 3i): OK
• [x] Check for names with portions [GENUS NOT SPECIFIED] = 0, [species not specified]: 0 new, 2 blocked.
• [ ] DOI: no

Metrics

ISSUES assessed 2024-08-07

TASKS

Resolved 2024-08-07:

Synced 2024-08-07