SF Lygaeoidea (id 1173): test report

[yroskov]

Data of 2021-08-20 taken from local machine http://10.194.234.20:3000/ 2021-10-04 File lygaeoidea_species_file(2021-08-20145631+0000)_coldp_otu_id_111655_2021-10-04t103726-0500 imported 2021-10-07.

(see DEV report https://github.com/CatalogueOfLife/testing/issues/93 )

• [x] Imported: 4683 spp (vs 4,272 + 113† in ac19)

• [x] Metadata: updated 2021-10-07

• [x] Classification: ok

• [x] Sector: superfamily Lygaeoidea re-established

[yroskov]

• [x] ISSUES assessed

• Unparsable Authorship, 45: 45 names (acc & syn) with symbol * in authorstrings - NO ACTION https://data.catalogueoflife.org/catalogue/3/dataset/1173/workbench?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&issue=unparsable%20authorship&limit=100&offset=0

• Partially Parsable Name, 115: synonyms with portion "subsp." and missing species epithet = BLOCKED https://data.catalogueoflife.org/catalogue/3/dataset/1173/workbench?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&issue=partially%20parsable%20name&limit=100&offset=0

[yroskov]

• [x] TASKS:

• Blocked 58 names with portion"[GENUS NOT SPECIFIED]"

Resolved 2021-10-07:

Synced 2021-10-07

[yroskov]

Re-imported, re-synced with Distribution Gazetteer "text" 2021-10-08

[yroskov]

• [ ] Portion "subgen." included in the scientific name field in 6 synonyms: https://www.checklistbank.org/catalogue/3/dataset/1173/workbench?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&limit=50&offset=0&q=subgen

Fixed via Complex Decisions & synced 2022-08-19.

[yroskov]

New versions exported/imported SF->TW 2022-09-05 = release date; imported TW->CLB 2022-09-14; re-imported with fixed extinct flag 2022-10-19 Data taken from localhost:3000.

• [x] New importer used. Distribution added. "Looped synonymy" resolved.

• [x] Imported: 4704 spp (vs 4683 spp in Aug 2021)

• [x] Metadata: version & date updated

• [x] Classification: ok

• [x] Sector: superfamily Lygaeoidea

[yroskov]

ISSUES assessed 2022-10-26

• Unparsable Authorship, 45: names with asterisk in authorstring (e.g. Aphanus zucholdi (Giebel *, 1856)) = no action
• Partially Parsable Name, 123: synonyms without species epithet in the combination (e.g. Lygaeus subsp. marginifer Walker, 1872) = blocked

[yroskov]

TASKS

• Broken decisions, 622; re-match all = 79 remain broken; deleted all

• ACC-SYN infra, diff acc, same auth, 16 pairs = "looped synonymy" in type subspecies, for example,

ID	Status	scientificName	Authorship	Accepted	Rank
180645	accepted	Acompus rufipes rufipes	(Wolff, 1802)		subspecies
164423	synonym	Acompus rufipes rufipes	(Wolff, 1802)	Acompus rufipes (Wolff, 1802)	infraspecific name

= synonyms blocked

• SYN-SYN sp, diff acc, diff auth, 7 names: all cases related to Cymodema tabida

There are many problems in other TASKS reports. Need to be addressed after final migration in TW.

Resolved 2022-10-26

Synced 2022-10-26

[yroskov]

SF Lygaeoidea ver. 0.39.0 / 2024-03-08; imported 2024-03-08 from Geoff's laptop

• [x] Imported: 4724 spp (vs 4704 spp in Sep 2022)
• [x] Metadata: no = FIXED; version changed 0.39.0 / 2024-03-08 --> Mar 2024 / 2024-03-08
• [x] Classification: OK
• [x] Sector: broken - no subject; superfamily Lygaeoidea; repaired 2023-03-21
• [x] Extinct flag: OK
• [x] Environment: OK (test name Ashlockia longicorialis Hamid, 1975)
• [ ] Superspecies: (accepted names with portion "supersp" interpreted as "species aggregate" plus "supersp" as species epithet = n/a
• [x] Block name with missing genus: "polychismini Slater & Brailovsky, 1986", synonym = blocked
• [ ] no URLs to species pages in TaxonPages
• [ ] DOI: incorrect; doi https://doi.org/10.15468/krxm59 and refers to January 14, 2019

Metrics

ISSUES assessed 2024-03-21:

• Uninomial Field Misplaced, 6: https://www.checklistbank.org/catalogue/3/dataset/1173/workbench?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&issue=uninomial%20field%20misplaced&limit=100&offset=0 @gdower, perhaps, there is a sense to look on this. The issue present through different SFs (e.g. SF Coreoidea, SF Orthoptera, SF Lygaeoidea, etc.)

• Unparsable Authorship, 42: names with star symbol in the authorstring (e.g. Aphanus zucholdi (Giebel , 1856); Cimex bardanae Preyssler , 1790) https://www.checklistbank.org/catalogue/3/dataset/1173/workbench?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&issue=unparsable%20authorship&limit=100&offset=0 = I am unable to apply Complex Decisions https://github.com/CatalogueOfLife/backend/issues/1309 = FIXED 2024-03-22

TASKS

• Broken decisions, 1006 = deleted
• Outdated decisions, 10 = deleted

Resolved 2024-03-21:

Synced 2024-03-21; re-synced 2024-03-22 after removal star symbol from the authorstrings.

[yroskov]

SF Lygaeoidea ver. 0.40.3 / 2024-04-18; imported 2024-04-19 from Geoff's laptop

• [x] Imported: 4724 spp (vs 4724 spp)
• [x] Metadata: version changed 0.40.3 / 2024-04-18 --> Apr 2024 / 2024-04-18
• [x] Classification: OK
• [x] Sector: OK
• [x] Extinct flag: OK
• [x] Environment: OK (test name Ashlockia longicorialis Hamid, 1975)
• [x] Superspecies: n/a
• [x] Block name with missing genus: "polychismini Slater & Brailovsky, 1986", synonym = blocked
• [ ] no URLs to species pages in TaxonPages
• [ ] DOI: absent

Metrics

TASKS

• Broken decisions, 3 = deleted
• Outdated decisions, 3 = deleted

Resolved 2024-04-23:

Synced 2024-04-23

[yroskov]

SF Lygaeoidea ver. 0.41.0 / 2024-05-06; imported 2024-05-06 from Geoff's laptop

• [x] Imported: 4724 spp (vs 4724 spp)
• [x] Metadata: version changed 0.41.0 / 2024-05-06 -> May 2024 / 2024-05-06
• [x] Classification: OK
• [x] Sector: OK
• [x] Extinct flag: OK
• [x] Environment: OK (test name Ashlockia longicorialis Hamid, 1975)
• [x] Superspecies: n/a
• [x] Block name with missing genus: "polychismini Slater & Brailovsky, 1986", synonym = blocked
• [ ] no URLs to species pages in TaxonPages
• [ ] DOI: absent

Metrics, Issues, Tasks = no changes

Synced 2024-05-13

[yroskov]

SF Lygaeoidea ver. 0.41.1 / 2024-06-03; imported 2024-06-03 from Geoff's laptop

• [x] Imported: 4724 spp (vs 4724 spp)
• [x] Metadata: version changed 0.41.1 / 2024-06-03 -> Jun 2024 / 2024-06-03
• [x] Classification: OK
• [x] Sector: OK
• [x] Extinct flag: OK
• [x] Environment: OK (test name Ashlockia longicorialis Hamid, 1975)
• [x] Superspecies: n/a
• [x] Block name with missing genus: "polychismini Slater & Brailovsky, 1986", synonym = blocked
• [ ] no URLs to species pages in TaxonPages
• [ ] DOI: absent

Metrics

ISSUES

• [ ] Wrong Monomial Case, 3 = Block decision for 3 names failed with error 400 (may be @mdoering can help?) https://www.checklistbank.org/catalogue/3/dataset/1173/workbench?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&issue=wrong%20monomial%20case&limit=100&offset=0

TASKS no issues

I am unable to block incorrect names. It looks like previous version is cleaner. No sync in June

[yroskov]

SF Lygaeoidea ver. 0.42.0 / 2024-07-05; imported 2024-07-05 from Geoff's laptop

• [x] Imported: 4724 spp (vs 4724 spp)
• [x] Metadata: version corrected 0.42.0 / 2024-07-05 -> Jul 2024 / 2024-07-05
• [x] Classification: OK
• [x] Sector: OK
• [x] Extinct flag: OK
• [x] Environment: OK (test name Ashlockia longicorialis Hamid, 1975)
• [x] Superspecies: n/a
• [x] Block name with missing genus: "polychismini Slater & Brailovsky, 1986", synonym = blocked
• [ ] no URLs to species pages in TaxonPages
• [ ] DOI: absent

Metrics

ISSUES

• [ ] Wrong Monomial Case, 3 = Block decision for 3 names failed with error 400

TASKS no new issues

Synced 2024-07-17

[yroskov]

SF Lygaeoidea ver. 0.43.1 / 2024-08-06; imported 2024-08-06 from Geoff's laptop

• [x] Imported: 4739 spp (vs 4724 spp)
• [x] Metadata: version corrected 0.43.1 / 2024-08-06 -> Aug 2024 / 2024-08-06
• [x] Classification: OK
• [x] Sector: OK
• [x] Extinct flag: OK
• [x] Environment: OK (test name Ashlockia longicorialis Hamid, 1975)
• [x] Superspecies: n/a
• [x] Block name with missing genus: "polychismini Slater & Brailovsky, 1986", synonym = blocked
• [ ] no URLs to species pages in TaxonPages
• [ ] DOI: absent

Metrics

ISSUES assessed 2024-08-13

Applied decisions didn't displayed in the interface - check blocked names:

• [ ] Missing Genus, 3 - check blocked synonyms with unknown genus after sync: ? heterogasterii Stål, 1872; ? artheneina Stål, 1872; ? polychismini Slater & Brailovsky, 1986

• [ ] Blacklisted Epithet, 2

• [ ] Parsed Name Differs, 9

• [ ] Unparsable Authorship, 42 - 42 names with asterisk in authorstring (for attention of GSD authors)

TASKS = no new issues

Synced 2024=08-13

[yroskov]

SF Lygaeoidea ver. 0.43.2 / 2024-09-06; imported from Geoff's laptop

• [x] Imported: 4739 spp (vs 4739 spp)
• [x] Metadata: version corrected 0.43.2 / 2024-09-06 -> Sep 2024 / 2024-09-06
• [x] Classification: OK
• [x] Sector: OK
• [x] Extinct flag: OK
• [x] Environment: OK (test name Ashlockia longicorialis Hamid, 1975)
• [x] Superspecies: n/a
• [x] Block name with missing genus: "polychismini Slater & Brailovsky, 1986", synonym = blocked
• [ ] no URLs to species pages in TaxonPages
• [ ] DOI: absent

Metrics = no changes

TASKS = no new issues

Synced 2024-09-17