SF Isoptera (id 1198): test report

[yroskov]

Data of 2021-10-01 taken from sfg.taxonworks.org File Isoptera_coldp_otu_id_585557_2021-10-01T14 26 11+00 00 imported 2021-10-11.

(see DEV report https://github.com/CatalogueOfLife/testing/issues/94 )

• [x] Imported: 3062 spp (vs 2919 + 144† in ac19)

• [x] Metadata: updated from YAML file 2021-10-11. Version & date were manually changed as Oct 2021 / 2021-10-01.

• [x] Classification: Before import (left as in ac19 plus updated SF Cockroach):

After import and new sector established as infraorder Isoptera (all SF Cockroach sectors dropped in NotAssigned infraorder):

ITIS says: [order] Isoptera Brullé, 1832 Taxonomic Status: Current Standing: invalid - other, see Beccaloni & Eggleton (2013) regarding the treatment of termites as a subset of Blattodea. TW says: infraorder Isoptera Brulle, 1832. This name is valid/accepted.

• [x] Sector: infraorder Isoptera Brulle, 1832 established 2021-10-11

[yroskov]

• [x] ISSUES assessed

[yroskov]

• [x] TASKS:

Resolved 2021-10-11:

Synced 2021-10-11

[yroskov]

• [ ] Set of genera dropped out of parent families: https://github.com/gbif/portal-feedback/issues/3898 @gdower, it looks like there was a problem in TW export script.

Example genera: Porotermes Hagen, 1858 Stolotermes Hagen, 1858 also Allotermes, Bicornitermes, Bifiditermes, Calcaritermes, Ceratokalotermes, etc.

Placement in TW looks correct to me (Porotermes, Allotermes): https://sfg.taxonworks.org/tasks/nomenclature/browse?taxon_name_id=444558

[yroskov]

New export 2022-02-16 from https://sfg.taxonworks.org/downloads/298

File isoptera_catalog_coldp_otu_id_585557_2022-02-16t212052+0000 imported 2022-02-16.

New export did not fix issues with genera outside families.

Classification: https://data.catalogueoflife.org/dataset/1198/classification

• [x] The main problem, family Stolotermitidae is missing in CLB, but it is valid/accepted in TW: https://sfg.taxonworks.org/tasks/nomenclature/browse?taxon_name_id=682639 = FIXED

Because of this missing family, its child subfamily Stolotermitinae (with genus Stolotermes) is in the tree root. It's second child subfamily Porotermitinae (with genera Chilgatermes & Porotermes) is recognized as "bare name" in CLB. as a result, genera Chilgatermes & Porotermes also appear in the tree root.

Illustrations:

• Genus Stolotermes is in subfamily Stolotermitinae, but there is no parent family Stolotermitidae (see image above)

TW view (Stolotermes in subfamily Stolotermitinae - family Stolotermitidae):

• Genera Chilgatermes & Porotermes are in the tree root (i.e. out of families)

View in TW (both genera are in Porotermitinae subfamily (in family Stolotermitidae):

OTHER ISSUES IN THE TREE:

• [x] Families Mesotermitidae & Pliotermitidae are empty = OK

The same in TW:

• [x] Subfamily Cretatermitinae is empty = FIXED

However, there are 5 children genera in TW:

Export of 2022-02-16 was not synced

[yroskov]

@gdower: Stolotermitidae has no OTU. That's the problem.

This explains all.

[yroskov]

@hhopkins77, could you please add OTU with family Stolotermitidae and its children? (see about our problems above, including a ticket from GBIF: Incorrect family placing of Porotermes and Stolotermes genera gbif/portal-feedback#3898)

[yroskov]

New export 2022-02-27 after OTU fix. File isoptera_catalog_coldp_otu_id_585557_2022-02-17t152157+0000 imported 2022-02-27.

Classification:

[yroskov]

New export 2022-02-27 after Cretatermitinae OTU fix. File isoptera_catalog_coldp_otu_id_585557_2022-02-17t155655+0000 imported 2022-02-27.

Classification:

• [x] Imported: 3068 spp

• [x] Metadata: version & date updated as Feb 2022 / 2022-02-17.

• [x] Classification: OK

• [x] Sector: OK

• [x] ISSUES assessed 2022-02-17

TASKS 2022-02-17

Resolved:

Synced 2022-02-17

[yroskov]

New versions exported/imported SF->TW 2022-09-05 = release date; imported TW->CLB 2022-09-14; re-imported with fixed extinct flag 2022-10-20 Data taken from localhost:3000.

• [x] New importer used. Distribution added. "Looped synonymy" resolved.

• [x] Imported: 3080 spp (vs 3062 spp in Aug 2021)

• [x] Metadata: version & date updated

• [x] Classification: in the Tree root: subfamily †Cretatermitinae (no parent family in the classifiction); empty subgenus Eutermes (Eutermes) Heer, 1849 = blocked

• [x] Sector: infraorder Isoptera

[yroskov]

ISSUES assessed 2022-10-27

[yroskov]

TASKS

• Broken decision, 1; successfully re-matched

Resolved 2022-10-27

Synced 2022-10-27

[yroskov]

SF Isoptera of 0.28.1 / 2023-01-03; imported 2023-01-03; re-imported 2023-01-06 from Geoff's laptop "Data taken from localhost:3000; ver. 0.28.1"

• [x] Imported: 3085 spp (vs 3080 spp)
• [x] Metadata: version shown as "0.28.1" = TW software version on Geoff's laptop. Export date "2023-01-03" does not go to the bibliographic citation. It means, "0.28.1" will be shown as unchanged version through all checklist updates. The checklist version should be shown as "Jan 2023/0.28.1" at least. = AGREED with Geoff to keep old style as "Jan 2023" Brought to the attention of TW group.
• [x] Classification: family †Pliotermitidae Pongrácz, 1917 has no children; subfamily †Cretatermitinae Emerson, 1968, genus Hodotermopsis Holmgren, 1911 and (empty subgenus Eutermes (Eutermes) Heer, 1849 = blocked) are in the root of the Tree inside infraorder Isoptera
• [x] Sectors: OK, infraorder Isoptera
• [x] Missing flag "extinct" = needs re-import = FIXED 2023-01-06

ISSUES assessed 2023-01-23:

TASKS resolved 2023-01-06:

Synced 2023-01-06

[yroskov]

SF Isoptera of 2023-02-02 / 2023-02-02; imported 2023-02-02 from Geoff's laptop

• [x] Imported: 3086 spp (vs 3085 spp)
• [x] Metadata: OK
• [x] Classification: family †Pliotermitidae Pongrácz, 1917 has no children; subfamily †Cretatermitinae Emerson, 1968, genus Hodotermopsis Holmgren, 1911 and (empty subgenus Eutermes (Eutermes) Heer, 1849 = blocked) are in the root of the Tree inside infraorder Isoptera
• [x] Sectors: OK
• [x] flag "extinct" = OK

TASKS

Synced 2023-02-03

[yroskov]

SF Isoptera of 0.30.3 / 2023-03-06 ; imported 2023-03-07 from Geoff's laptop

• [x] Imported: 3086 spp (vs 3086 spp)
• [x] Metadata: version corrected 0.30.3 / 2023-03-06 -> 2023-03-06 / 2023-03-06
• [x] Classification: no changes (see above)
• [x] Sectors: OK
• [x] flag "extinct" = OK

TASKS

Synced 2023-03-08

[yroskov]

SF Isoptera of 0.32.2 / 2023-04-12; imported 2023-04-12 from Geoff's laptop

• [x] Imported: 3086 spp (vs 3086 spp)
• [x] Metadata: version corrected 0.32.2 / 2023-04-12 -> 2023-04-12 / 2023-04-12
• [x] Classification: no changes (see above)
• [x] Sectors: OK
• [x] flag "extinct" = OK

TASKS = ok

Synced 2023-04-17

[yroskov]

SF Isoptera of 0.32.3 / 2023-05-10; imported 2023-05-10 from Geoff's laptop

• [x] Imported: 3086 spp (vs 3086 spp)
• [x] Metadata: version corrected 0.32.3 / 2023-05-10 -> 2023-05-10 / 2023-05-10
• [x] Classification: no changes (see above)
• [x] Sectors: OK
• [x] flag "extinct" = OK

TASKS = ok

Synced 2023-05-11

[yroskov]

SF Isoptera of 0.33.1 / 2023-07-13; imported 2023-07-13 from Geoff's laptop

• [x] Imported: 3094 spp (vs 3086 spp)
• [x] Metadata: version corrected 0.33.1 / 2023-07-13 -> 2023-07-13 / 2023-07-13
• [x] Classification: no changes (see above)
• [x] Sectors: OK
• [x] flag "extinct" = OK

ISSUES assessed 2023-07-14

TASKS

Resolved 2023-07-14:

Synced 2023-07-14

[yroskov]

SF Isoptera of 0.34.1 / 2023-08-08; imported 2023-08-08 from Geoff's laptop

• [x] Imported: 3095 spp (vs 3094 spp)
• [x] Metadata: version corrected 0.34.1 / 2023-08-08 -> 2023-08-08 / 2023-08-08
• [x] Classification: no changes (see above)
• [x] Sectors: OK
• [x] flag "extinct" = OK

TASKS

• Broken decisions, 1: deleted

Resolved 2023-08-09:

Synced 2023-08-09

[yroskov]

SF Isoptera of 0.34.3 / 2023-09-06; imported 2023-09-06 from Geoff's laptop

• [x] Imported: 3094 spp (vs 3095 spp)
• [x] Metadata: version corrected 0.34.3 / 2023-09-06 -> 2023-09-06 / 2023-09-06
• [x] Classification: OK. Family †Pliotermitidae Pongrácz, 1917 has no children. Subfamily †Cretatermitinae Emerson, 1968, and genera Eutermes Heer, 1849 & Hodotermopsis Holmgren, 1911 are in the root of the Tree inside infraorder Isoptera
• [x] Sectors: OK
• [x] flag "extinct" = OK

TASKS = no issues

Synced 2023-09-11

[yroskov]

SF Isoptera of 0.34.5 / 2023-10-04; imported 2023-10-04, re-imported 2023-10-05 from Geoff's laptop

• [x] Imported: 3094 spp (vs 3094 spp)
• [x] Metadata: version corrected 0.34.5 / 2023-10-05 -> 2023-10-05 / 2023-10-05
• [x] Classification: OK. Family †Pliotermitidae Pongrácz, 1917 has no children. Subfamily †Cretatermitinae Emerson, 1968, and genera Eutermes Heer, 1849 & Hodotermopsis Holmgren, 1911 are in the root of the Tree inside infraorder Isoptera
• [x] Sectors: OK
• [x] flag "extinct" = missing (for @gdower) = FIXED

TASKS = no issues

Synced 2023-10-05

[yroskov]

SF Isoptera of 0.35.2 / 2023-11-08; imported 2023-11-09 from Geoff's laptop

• [x] Imported: 3095 spp (vs 3094 spp)
• [x] Metadata: version corrected 0.35.2 / 2023-11-08 -> 2023-11-08 / 2023-11-08
• [x] Classification: OK. Family †Pliotermitidae Pongrácz, 1917 has no children. Subfamily †Cretatermitinae Emerson, 1968, and genera Eutermes Heer, 1849 & Hodotermopsis Holmgren, 1911 are in the root of the Tree inside infraorder Isoptera
• [x] Sectors: OK
• [x] flag "extinct": OK

ISSUES assessed 2023-11-09

TASKS no issues

Synced 2023-11-09

[yroskov]

SF Isoptera of 0.36.0 / 2023-12-07; imported 2023-12-07 from Geoff's laptop

• [x] Imported: 3104 spp (vs 3095 spp)
• [x] Metadata: version corrected 0.36.0 / 2023-12-07 -> 2023-12-07 / 2023-12-07
• [x] Classification: OK. Family †Pliotermitidae Pongrácz, 1917 has no children. Subfamily †Cretatermitinae Emerson, 1968, and genera Eutermes Heer, 1849 & Hodotermopsis Holmgren, 1911 are in the root of the Tree inside infraorder Isoptera
• [x] Sectors: OK
• [x] flag "extinct": OK

TASKS no issues

Synced 2023-12-07

[yroskov]

SF Isoptera of 0.37.0 / 2024-01-02; imported 2024-01-02 from Geoff's laptop

• [x] Imported: 3104 spp (vs 3104 spp)
• [x] Metadata: version corrected 0.37.0 / 2024-01-02 -> 2024-01-02 / 2024-01-02
• [x] Classification: OK. Family †Pliotermitidae Pongrácz, 1917 has no children. Subfamily †Cretatermitinae Emerson, 1968, two genera Eutermes Heer, 1849 & Hodotermopsis Holmgren, 1911, and species †Longitermes pulcher Jouault, Engel, Legendre & Nel, 2022 are in the root of the Tree inside infraorder Isoptera
• [x] Sectors: OK
• [x] flag "extinct": OK
• [ ] DOI: absent

TASKS

• Broken decisions, 0
• Outdated decisions, 1: deleted

Resolved 2024-01-03:

Synced 2024-01-03

[yroskov]

SF Isoptera of 0.38.1 / 2024-02-06; imported 2024-02-06 from Geoff's laptop

• [x] Imported: 3107 spp (vs 3104 spp)
• [x] Metadata: version corrected 0.38.1 / 2024-02-06 -> 2024-02-06 / 2024-02-06
• [x] Classification: OK. Family †Pliotermitidae Pongrácz, 1917 has no children. Subfamily †Cretatermitinae Emerson, 1968, two genera Eutermes Heer, 1849 & Hodotermopsis Holmgren, 1911, and species †Longitermes pulcher Jouault, Engel, Legendre & Nel, 2022 are in the root of the Tree inside infraorder Isoptera
• [x] Sectors: OK
• [x] flag "extinct": OK
• [ ] DOI: absent

TASKS no issues

Synced 2024-02-20

[yroskov]

SF Isoptera of 0.39.0 / 2024-03-08; imported2024-03-08 from Geoff's laptop

• [x] Imported: 3107 spp (vs 3107 spp)
• [x] Metadata: version corrected 0.39.0 / 2024-03-08 -> 2024-03-08 / 2024-03-08
• [x] Classification: OK, as above
• [x] Sectors: OK
• [x] flag "extinct": OK
• [x] Portion [species not specified]: 1 sp Eutermes [species not specified] iheringi Czerwinski, 1901 = blocked
• [ ] DOI: absent

Metrics

TASKS no issues

Synced 2024-03-20

[yroskov]

SF Isoptera of 0.40.3 / 2024-04-18; imported 2024-04-18 from Geoff's laptop

• [x] Imported: 3110 spp (vs 3107 spp)
• [x] Metadata: version corrected 0.40.3 / 2024-04-18 -> 2024-04-18 / 2024-04-18
• [x] Classification: OK, as above
• [x] Sectors: OK
• [x] flag "extinct": OK
• [x] Portion [species not specified]: 1 sp Eutermes [species not specified] iheringi Czerwinski, 1901 = blocked
• [ ] DOI: absent

Metrics

TASKS

Resolved 2024-04-22:

Synced 2024-04-22

[yroskov]

SF Isoptera of 0.41.0 / 2024-05-06; imported 2024-05-06 from Geoff's laptop

• [x] Imported: 3111 spp (vs 3110 spp)
• [x] Metadata: version corrected 0.41.0 / 2024-05-06 -> May 2024 / 2024-05-06
• [x] Classification: OK, as above
• [x] Sectors: OK
• [x] flag "extinct": OK
• [x] Portion [species not specified]: 1 sp Eutermes [species not specified] iheringi Czerwinski, 1901 = blocked
• [ ] DOI: absent

Metrics

TASKS no new issues

Synced 2024-05-09

[yroskov]

SF Isoptera of 0.41.1 / 2024-06-03; imported 2024-06-03 from Geoff's laptop

• [x] Imported: 3110 spp (vs 3111 spp)
• [x] Metadata: version corrected 0.41.1 / 2024-06-03 -> Jun 2024 / 2024-06-03
• [x] Classification: OK, as above
• [x] Sectors: OK
• [x] flag "extinct": OK
• [x] Portion [species not specified]: 1 sp Eutermes [species not specified] iheringi Czerwinski, 1901 = blocked
• [ ] DOI: absent

Metrics

ISSUES

TASKS

• Broken decisions, 1 = deleted

Resolved 2024-06-04:

Synced 2024-06-04

[yroskov]

SF Isoptera of 0.42.0 / 2024-07-05; imported 2024-07-05 from Geoff's laptop

• [x] Imported: 3131 spp (vs 3110 spp)
• [x] Metadata: version corrected 0.42.0 / 2024-07-05 -> Jul 2024 / 2024-07-05
• [x] Classification: OK, as above
• [x] Sectors: OK
• [x] flag "extinct": OK
• [x] Portion [species not specified]: 1 sp Eutermes [species not specified] iheringi Czerwinski, 1901 = blocked
• [ ] DOI: absent

Metrics

TASKS

Resolved 2024-07-16:

Synced 2024-07-16

[yroskov]

SF Isoptera of 0.43.1 / 2024-08-06; imported 2024-08-06 from Geoff's laptop

• [x] Imported: 3181 spp (vs 3131 spp)
• [x] Metadata: version corrected 0.43.1 / 2024-08-06 -> Aug 2024 / 2024-08-06
• [x] Classification: OK, as above
• [x] Sectors: OK
• [x] flag "extinct": OK
• [ ] DOI: absent

Metrics

ISSUES assessed 2024-08-09

TASKS

Resolved 2024-08-09:

Synced 2024-08-09

[yroskov]

PREVIEW 2024-08-20 ChecklistBank: 301619

• [ ] SF Isoptera, metadata page https://preview.catalogueoflife.org/data/dataset/1198 - there is no Taxonomic coverage

@mdoering, if I am not wrong, Taxonomic coverage is generated by the software, but it is missing in SF Isoptera (both on preview website and production https://www.catalogueoflife.org/data/dataset/1198)

(Note: all other SF checklists have Taxonomic coverage)

@mdoering, I know the problem: sector name was changed in the source as infraorder Termitoidae Latreille, 1802. I am working on this.

@mdoering, hmm, actually all are fine on sector level, and classification string here https://www.catalogueoflife.org/data/taxon/C3V76 is fine. Why it does not appear in Taxonomic coverage?

[yroskov]

SF Isoptera of 0.43.2 / 2024-09-06; imported from Geoff's laptop

• [x] Imported: 3181 spp (vs 3181 spp)
• [x] Metadata: version corrected 0.43.2 / 2024-09-06 -> Sep 2024 / 2024-09-06
• [x] Classification: OK, as above
• [x] Sectors: OK
• [x] flag "extinct": OK
• [ ] DOI:

Metrics

TASKS = no new issues

Synced 2024-09-13