CoL of March 2022

[yroskov]

• [x] ITIS of 2022-02-28; imported 2022-03-02; synced 2022-03-02. New sectors: superfamilies Alpheoidea (now with all families) & Atyoidea in suborder Pleocyemata

• [x] WoRMS of 2022-03-01; an experiment with automatic pipe: 2 Mar (import), 3 Mar (sync), 4 Mar (verify); imported 2022-03-02; synced 2022-03-03

• [x] World Ferns 12.10 of 2022-02-18 received; WFerns replacement of 2022-02-19; imported 2022-02-21; synced 2022-02-22; ; assessed 2022-03-03; re-synced 2022-03-03

• [x] World Plants 12.10 of 2022-02-18 received; imported 2022-02-21; synced 2022-02-24; assessed 2022-03-03; re-synced 2022-03-03

• [x] Scarabs of 2022-03-14 received; imported 2022-03-14; assessed 2022-03-14; synced 2022-03-17

• [x] Global Gracillariidae might be available in CoLDP; eml from Chantal/François Malherbe of 2021-11-12; first draft on DEV; ver. 2022-01-31 imported on PROD 2022-02-16; resolved; synced 2022-03-11

  Dear Yury, Yes, François did update the Gracillariidae checklist on the CoL checklistbank. Please proceed with the ingestion into Catalogue of Life production for the March release. Thank you for your support. André

• [x] Pterophoroidea ver. 1.1.22.63 (04 Mar 2022) / 2022-03-04; imported 2022-03-03 (sic); synced 2022-03-21

• [ ] StaphBase - request for a new version sent; data received 2021-10-21; converting in TW

• [ ] Species Fungorum Plus - Paul>"For the last few weeks I have been updating Species Fungorum and resolving some internal inconsistencies / errors in preparation for another download for COL+, partly prompted by a request from the GNI for a new download. I may have to get back to you if I forget how to ‘format’ the data, but this may be in early January. Reminded 2022-01-25.

• [ ] Collembola.org - Anton> "Frans is happy with our (your) activities and happy to share the checklist as long as he doesn't need to do extra work :) To my knowledge he is updating the checklist regularly (~once a month). If I'm correct, Geoff now have a crawling script and can mine the checklist again for the next CoL version. Or do you need anything from my side to make it happen? Reminded 2022-01-25.

• [ ] WCVP (Markus); imported to the PROD 2021-12-03 (https://github.com/CatalogueOfLife/testing/issues/177). Hybrid genera outside families. 2021-12-22: Sector Acorales - Acoraceae established for the purpose of accessibility of Workbench tool (available inside the Project only). 2022-01-13: Sector WCVP-Acoraceae deleted; WCSP-Acoraceae re-established, synced. Metadata need to be checked with Rafael. 2022-02-02: cannot do assembly of families until this will be fixed: https://github.com/CatalogueOfLife/checklistbank/issues/998 = FIXED updated view imported 2022-02-14;

• [ ] Systema Dipterorum, v 3.6 of 2022-02-14 received;

• [ ] Gelechiidae (new, not adopted yet, https://data.catalogueoflife.org/dataset/2362/names) imported 2022-02-11 - for March

Other 11 GSDs for updates: https://docs.google.com/spreadsheets/d/1WRxfYQF8h2Xiu3gNUvQ3de-zRH-BSq3wYWIAbHHBrhY/edit?usp=sharing

[yroskov]

Entire project: 243 broken sectors. Kicked off "RematchAll" 2022-02-24 by mistake.

Result: 223 broken sectors

[yroskov]

• [x] 220 broken sectors in the project on 2022-02-25: 92 in ITIS, 52 in WoRMS, 15 in WCSP, 8 in WWW, 7 in 3i Auchenorrhyncha, and 46 in other GSDs.

@mdoering, do you know why it happens, if I didn't touch these sectors?

FIXED 2022-03-01: https://github.com/CatalogueOfLife/testing/issues/185#issuecomment-1055564594 only 13 IRMNG sectors remain broken

[yroskov]

• [x] Unexpected decision logs, see https://github.com/CatalogueOfLife/data/issues/397

Majority of decisions have been resolved by Markus ("I have updated 79.702 out of 98.129 decisions based on the original subject id"). Remaining ~18427 were deleted. Stats per GSD: https://github.com/CatalogueOfLife/data/issues/397#issuecomment-1055632459

My priority for repair is "top seven":

GSD (id)	Count	Completed
World Plants (1141)	12150	2022-03-03, except ACC-ACC species (different authors) https://github.com/CatalogueOfLife/backend/issues/1118
World Ferns (1140)	3609	2022-03-03
ReptileDB (1008)	1223	2022-03-04
Scarabs (1027)	819	2022-03-04
3i Auchenorrhyncha (1189)	448
WoRMS Mollusca (1130)	56	2022-03-04
WoRMS MilliBase (1200)	42	2022-03-04

[yroskov]

Implementation of new management classification in Vertebrata (Bailly & al., 2022). (https://github.com/CatalogueOfLife/testing/issues/186#)

• [ ] 4 taxa: Parvphylum Chondrichthyes & Parvphylum Osteichthyes; Gigaclass Actinopterygii & Gigaclass Sarcopterygii assigned as "Unranked". Ranks need to be corrected after fix of issue 1120.

• [ ] FishBase sectors should be established with help of @NicBailly https://github.com/CatalogueOfLife/testing/issues/186#issuecomment-1063359669

[yroskov]

Preview started 2022-03-17 at 16.53 (server time). 2022-03-18 22.33 - not finished yet (after 30h). Mistake: preview started before FishBase sync completed. Need to be re-run.

CoL of 2022-03-19 converted by Markus (took 4.5h), and available on PREVIEW.

[yroskov]

CoL Preview 2022-03-19 tests of 2022-03-21.

Stats after assembly of Vertebrata classification: FishBase 33932 0 vs 33932 0 ReptileDB 11688 0 vs 11688 0

[yroskov]

Metadata (what's new) updated.

New Preview started 2022-03-21 at 21.42 (server time), finished 2022-03-21 at 2:10 am ~4.30h

[yroskov]

CoL Preview 2022-03-21 tests of 2022-03-22.

Preview is OK. Ready for deployment to prod.

After Zoom of 2022-03-22 agreed: add a sentence in metadata with the dedication of March edition to Mil de Reus' retirement after her 12 years service to CoL.

Olaf: The Catalogue of Life Team dedicates the March 2022 edition of the COL Checklist to Mil de Reus for 12 years of commitment to facilitating the Species 2000 Secretariat and the Catalogue of Life endeavour.

CoL of 2022-03-21 is ready for deployment on PROD