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CatalogueOfLife / testing

Editorial tests and discussion to prepare for COL releases
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All 17 Species Files checklists in Oct-Nov 2022 #210

Open yroskov opened 2 years ago

yroskov commented 2 years ago

New versions exported/imported SF->TW 2022-09-05 = release date; imported TW->CLB 2022-09-14; re-imported with fixed extinct flag 2022-10-19

Data taken from localhost:3000.

yroskov commented 2 years ago
-- GSD name Imported, spp Sector Metadata Classification Sync Report
-- FIRST BATCH
[x] SF Aphid 5972 infraorder Aphidomorpha updated OK 2022-10-20 https://github.com/CatalogueOfLife/testing/issues/172#issuecomment-1281325971
[x] SF Chrysididae 200 family Chrysididae updated OK 2022-10-20 https://github.com/CatalogueOfLife/testing/issues/164#issuecomment-1281470862
[x] SF Coleorrhyncha 115 paleofamilies Hoploridiidae, Karabasiidae & Progonocimicidae updated OK 2022-10-20 https://github.com/CatalogueOfLife/testing/issues/165#issuecomment-1281528295
[x] SF Coreoidea 3130 superfamily Coreoidea updated OK 2022-10-26 https://github.com/CatalogueOfLife/testing/issues/167#issuecomment-1292201428
[x] SF Lygaeoidea 4704 superfamily Lygaeoidea updated OK 2022-10-26 https://github.com/CatalogueOfLife/testing/issues/168#issuecomment-1292258960
[x] SF Mantodea 2539 order Mantodea updated OK 2022-10-26 https://github.com/CatalogueOfLife/testing/issues/169#issuecomment-1292672993
[x] SF Orthoptera 29441 order Orthoptera updated OK 2022-10-20 https://github.com/CatalogueOfLife/testing/issues/166#issuecomment-1265756004
[x] SF Phasmida 3481 order Phasmida updated suborder Agathemerodea is empty 2022-10-27 https://github.com/CatalogueOfLife/testing/issues/170#issuecomment-1293639711
[x] SF Isoptera 3080 infraorder Isoptera updated subfamily †Cretatermitinae has no parent family in the classifiction; empty subgenus Eutermes (Eutermes) Heer, 1849 = blocked 2021-10-27 https://github.com/CatalogueOfLife/testing/issues/171#issuecomment-1293791014
-- SECOND BATCH
[x] SF Cockroach 4895 superfamilies Blaberoidea, Blattoidea, Corydioidea. Epifamily Termitoidae blocked updated OK 2022-10-27 https://github.com/CatalogueOfLife/testing/issues/161#issuecomment-1293971631
[x] SF Dermaptera 2031 order Dermaptera updated OK 2022-10-31 https://github.com/CatalogueOfLife/testing/issues/155#issuecomment-1297442086
[x] SF Embioptera 458 order Embioptera updated OK 2022-10-31 https://github.com/CatalogueOfLife/testing/issues/156#issuecomment-1297528250
[x] SF Grylloblattodea 584 order Grylloblattodea updated OK; order Grylloblattodea: empty suborder †Blattogryllopterida, 9 paleo families and 19 paleo genera in the root 2022-10-31 https://github.com/CatalogueOfLife/testing/issues/157#issuecomment-1297657236
[x] SF Mantophasmatodea 27 order Mantophasmatodea updated OK 2022-11-01 https://github.com/CatalogueOfLife/testing/issues/159#issuecomment-1299017280
[x] SF Plecoptera 4344 order Plecoptera updated OK 2022-11-02 https://github.com/CatalogueOfLife/testing/issues/158#issuecomment-1300691013
[x] SF Psocodea 11147 order Psocodea updated OK 2022-11-03 https://github.com/CatalogueOfLife/testing/issues/160#issuecomment-1300836938
[x] SF Zoraptera 62 order Zoraptera updated OK 2022-11-03 https://github.com/CatalogueOfLife/testing/issues/154#issuecomment-1302496426
yroskov commented 2 years ago

This is serious stopper which we need to resolve asap - @olafbanki, @mdoering, @gdower

mdoering commented 2 years ago

Yes, that is a new security "feature" that prevends manual changes in metadata for datasets that are registered in GBIF. There is still an ongoing discussion here that you might want to get involved with: https://github.com/CatalogueOfLife/checklistbank/issues/1088

The desire is to keep the metadata for the same dataset +/- identical in GBIF & CLB. And also for external datasets that come with some metadata which would otherwise overrite manual edits - with the exception of the new metadata merges, see https://github.com/CatalogueOfLife/backend/issues/1047.

mdoering commented 2 years ago

Dont those SF archives come with metadata already?

yroskov commented 2 years ago

TASKS report ACC-SYN sp, diff acc, same auth include binomial species as a synonym to superspecies and as an accepted name. Synonyms blocked in CLB via decisions in current design.

yroskov commented 2 years ago

Where the problem sits (SF - TW - COLDP - CLB)? = in CLB interpretation of NOMEN data exported from CLB.

I would expect use a status "Available" instead of "Potentially valid".

mdoering commented 2 years ago

CLB. I tried to explain that it is behaving as expected though.

yroskov commented 2 years ago

Thank you, @mdoering. The problem is, status "potentially valid" with all valid SF species in the CoL makes SF authors uncomfortable. We need to find solution.

True nomenclatural status "Available" is better than "Potentially valid".

yroskov commented 6 months ago

Updates once per year (in Jan):

Coleorrhyncha Embioptera (after May 2024) Mantophasmatodea Zoraptera

Monthly updates:

Dermaptera Embioptera Isoptera Plecoptera Psocodea

Heidi, 2024-05-01: I am going to move Embioptera over to the annual update list