All 65 WoRMS checklists in May-June 2023

[yroskov]

30 of 65 active checklists in Aug 2022 - May 2923 (in bold). New TASK issues need to be resolved. Delete broken decisions.

[yroskov]

Imports of 2023-05-01 & *2023-06-01	GSD id	Broken decisions (May, June)	TASKS	Re-synced	Re-synced
WoRMS Actiniaria	1176	6, 6	https://github.com/CatalogueOfLife/testing/issues/31#issuecomment-1539028718, https://github.com/CatalogueOfLife/testing/issues/31#issuecomment-1579446508	2023-05-08	2023-06-06
WoRMS Amphipoda	1202	6, 6	https://github.com/CatalogueOfLife/testing/issues/32#issuecomment-1538778069, https://github.com/CatalogueOfLife/testing/issues/32#issuecomment-1579451340	2023-05-08	2023-06-06
WoRMS Antipatharia	1194	0	no issues	no re-sync
WoRMS Appendicularia	1178	0	no issues	no re-sync
WoRMS Ascidiacea	1186	0	no issues	no re-sync	no issues
WoRMS Asteroidea	1095	3, 3	https://github.com/CatalogueOfLife/testing/issues/36#issuecomment-1540835353, https://github.com/CatalogueOfLife/testing/issues/36#issuecomment-1580767066	2023-05-09	2023-06-07
WoRMS Bochusacea	1086	0	no issues	no re-sync
WoRMS Brachiopoda	2299	1	https://github.com/CatalogueOfLife/testing/issues/124#issuecomment-1542540975	2023-05-10
WoRMS Brachypoda	1087	0	no issues	no re-sync
WoRMS Brachyura !!	1108	-, 39	https://github.com/CatalogueOfLife/testing/issues/39#issuecomment-1579146657	switched off until 2023-06-06	2023-06-06
WoRMS Bryozoa	1081	2, 10	https://github.com/CatalogueOfLife/testing/issues/40#issuecomment-1540886137, https://github.com/CatalogueOfLife/testing/issues/40#issuecomment-1578942671	2023-05-09	2023-06-06
WoRMS Cephalochordata	1154	0	no issues	no re-sync	no issues
WoRMS Ceriantharia	1179	0	no issues	no re-sync	no issues
WoRMS Cestoda	1127	3, 5	https://github.com/CatalogueOfLife/testing/issues/44#issuecomment-1540892964, https://github.com/CatalogueOfLife/testing/issues/44#issuecomment-1580774326	2023-05-09	2023-06-07
WoRMS Chaetognatha	1132
WoRMS Copepoda	1191	4, 11	https://github.com/CatalogueOfLife/testing/issues/50#issuecomment-1540898467, https://github.com/CatalogueOfLife/testing/issues/50#issuecomment-1580784651	2023-05-09	2023-06-07
WoRMS Corallimorpharia	1195
WoRMS Crinoidea	2300	5, 5	https://github.com/CatalogueOfLife/testing/issues/125#issuecomment-1542499645, https://github.com/CatalogueOfLife/testing/issues/125#issuecomment-1580792211	2023-05-10	2023-06-07
WoRMS Ctenophora	1180
WoRMS Cubozoa	1181
WoRMS Cumacea	1058	0	no issues	no re-sync
WoRMS Echinoidea	1106	0, 4	https://github.com/CatalogueOfLife/testing/issues/56#issuecomment-1542549456, https://github.com/CatalogueOfLife/testing/issues/56#issuecomment-1583167150	2023-05-10	2023-06-08
WoRMS Euphausiacea	2301	0	no issues	no re-sync
WoRMS Foraminifera *	1157	120, 130	https://github.com/CatalogueOfLife/testing/issues/61#issuecomment-1538703733, https://github.com/CatalogueOfLife/testing/issues/61#issuecomment-1577479514	2023-05-08	2023-06-05, 2023-06-09
WoRMS Gastrotricha	1122
WoRMS Gnathostomulida	1125
WoRMS Holothuroidea	1107	3, 2	https://github.com/CatalogueOfLife/testing/issues/57#issuecomment-1542518648, https://github.com/CatalogueOfLife/testing/issues/57#issuecomment-1579015134	2023-05-10	2023-06-06
WoRMS Hydrozoa	1112	4, 5	https://github.com/CatalogueOfLife/testing/issues/64#issuecomment-1542522065, https://github.com/CatalogueOfLife/testing/issues/64#issuecomment-1580799486	2023-05-10	2023-06-07
WoRMS Isopoda	1094	3, 8	https://github.com/CatalogueOfLife/testing/issues/65#issuecomment-1538761659, https://github.com/CatalogueOfLife/testing/issues/65#issuecomment-1580812816	2023-05-08	2023-06-07
WoRMS Kinorhyncha	1153	0	no issues	no re-sync
WoRMS Leptostraca	1105	0	no issues	no re-sync
WoRMS Loricifera	1182	0	no issues	no re-sync
WoRMS Merostomata	1152
WoRMS Mollusca *	1130	1060, 1199	https://github.com/CatalogueOfLife/testing/issues/70#issuecomment-1538715562, https://github.com/CatalogueOfLife/testing/issues/70#issuecomment-1577417292	2023-05-08	2023-06-05
WoRMS Monogenea	1126	3, 4	https://github.com/CatalogueOfLife/testing/issues/47#issuecomment-1542453068, https://github.com/CatalogueOfLife/testing/issues/47#issuecomment-1580837564	2023-05-10	2023-06-07
WoRMS Myriapoda (MilliBase)*	1200	33, 26	https://github.com/CatalogueOfLife/testing/issues/74#issuecomment-1538812780, https://github.com/CatalogueOfLife/testing/issues/74#issuecomment-1578999043	2023-05-08	2023-06-06
WoRMS Mystacocarida	1088
WoRMS Myxozoa	1129	1, 1	https://github.com/CatalogueOfLife/testing/issues/98#issuecomment-1542527135, https://github.com/CatalogueOfLife/testing/issues/98#issuecomment-1580842673	2023-05-10	2023-06-07
WoRMS Nematoda *	2302	48, 67	https://github.com/CatalogueOfLife/testing/issues/126#issuecomment-1538787351, https://github.com/CatalogueOfLife/testing/issues/126#issuecomment-1579058689	2023-05-08	2023-06-06
WoRMS Nemertea	1085	0	no issues	no re-sync
WoRMS Octocorallia	1131	22, 25	https://github.com/CatalogueOfLife/testing/issues/100#issuecomment-1542505699, https://github.com/CatalogueOfLife/testing/issues/100#issuecomment-1580849910	2023-05-10	2023-06-07
WoRMS Oligochaeta	1099	8, 4	https://github.com/CatalogueOfLife/testing/issues/101#issuecomment-1542509830, https://github.com/CatalogueOfLife/testing/issues/101#issuecomment-1581347023	2023-05-10	2023-06-07
WoRMS Ophiuroidea	1059	2, 2	https://github.com/CatalogueOfLife/testing/issues/58#issuecomment-1542513254, https://github.com/CatalogueOfLife/testing/issues/58#issuecomment-1581352185	2023-05-10	2023-06-07
WoRMS Orthonectida	1149
WoRMS Ostracoda	1175	7, 44	https://github.com/CatalogueOfLife/testing/issues/103#issuecomment-1542475758, https://github.com/CatalogueOfLife/testing/issues/103#issuecomment-1578920230	2023-05-10	2023-06-06, 2023-06-09
WoRMS Placozoa	1123
WoRMS Polychaeta	1090	10, 13	https://github.com/CatalogueOfLife/testing/issues/105#issuecomment-1538771042, https://github.com/CatalogueOfLife/testing/issues/105#issuecomment-1583128491	2023-05-08	2023-06-08
WoRMS Polycystina	1109
WoRMS Porifera	1044	18, 22	https://github.com/CatalogueOfLife/testing/issues/107#issuecomment-1542492208, https://github.com/CatalogueOfLife/testing/issues/107#issuecomment-1583133590	2023-05-10	2023-06-08
WoRMS Priapulida	1124
WoRMS Pycnogonida, PycnoBase	1183	0, 21	no issues, https://github.com/CatalogueOfLife/testing/issues/109#issuecomment-1583138025	no re-sync	2023-06-08
WoRMS Remipedia	1091
WoRMS Rhombozoa	1150	0	https://github.com/CatalogueOfLife/testing/issues/111#issuecomment-1582643498	-	2023-06-08
WoRMS Scleractinia	1196	21, 26	https://github.com/CatalogueOfLife/testing/issues/112#issuecomment-1542533647, https://github.com/CatalogueOfLife/testing/issues/112#issuecomment-1583155297	2023-05-10	2023-06-08
WoRMS Scyphozoa	1188	0	no issues	no re-sync
WoRMS Staurozoa	1184
WoRMS Strepsiptera	1103
WoRMS Tanaidacea	1110	18, 18	https://github.com/CatalogueOfLife/testing/issues/115#issuecomment-1542558546, https://github.com/CatalogueOfLife/testing/issues/115#issuecomment-1583172714	2023-05-10	2023-06-08
WoRMS Tantulocarida	1092
WoRMS Thaliacea	1185	0	no issues	no re-sync
WoRMS Thermosbaenacea	1093
WoRMS Trematoda	1128	6, 15	https://github.com/CatalogueOfLife/testing/issues/48#issuecomment-1539003206, https://github.com/CatalogueOfLife/testing/issues/48#issuecomment-1578961966	2023-05-08	2023-06-06
WoRMS Turbellarians	1193	13, 6	https://github.com/CatalogueOfLife/testing/issues/46#issuecomment-1539018016, https://github.com/CatalogueOfLife/testing/issues/46#issuecomment-1578976249	2023-05-08	2023-06-06
WoRMS Xenoturbellida	1100
WoRMS Zoantharia	1197	0	no issues	no re-sync

[yroskov]

• [ ] Issue with ordering author's names in WoRMS metadata: https://github.com/CatalogueOfLife/data/issues/454

[yroskov]

Metadata issues https://github.com/CatalogueOfLife/data/issues/454#issuecomment-1542988546

[yroskov]

WoRMS of 2023-06-01

Report on broken sectors includes 20 broken sectors, which cannot be repaired via Rematch button. Repair required manual fixes. I am going to complete this task before automatic sync.

(@olafbanki, could you please keep Camila & Diana informed about WoRMS checklists (I don't know their nicks in the GitHub)).

• [x] WoRMS Bochusacea order Bochusacea class Malacostraca = REPAIRED 2023-06-02
• [x] WoRMS Brachypoda order Brachypoda class Cephalocarida = FIXED 2023-06-06
• [x] WoRMS Cephalochordata subphylum Cephalochordata phylum Chordata = REPAIRED 2023-06-02
• [x] WoRMS Chaetognatha phylum Chaetognatha kingdom Animalia = REPAIRED 2023-06-02
• [x] WoRMS Cubozoa class Cubozoa phylum Cnidaria = REPAIRED 2023-06-02
• [x] WoRMS Euphausiacea order Euphausiacea class Malacostraca = REPAIRED 2023-06-02
• [x] WoRMS Gnathostomulida phylum Gnathostomulida kingdom Animalia = REPAIRED 2023-06-02
• [x] WoRMS Leptostraca order Leptostraca class Malacostraca = REPAIRED 2023-06-02
• [x] WoRMS Loricifera phylum Loricifera kingdom Animalia = REPAIRED 2023-06-02
• [x] WoRMS Merostomata class Merostomata phylum Arthropoda = REPAIRED 2023-06-02
• [x] WoRMS MilliBase class Diplopoda phylum Arthropoda = REPAIRED 2023-06-02
• [x] WoRMS Mystacocarida subclass Mystacocarida phylum Arthropoda = REPAIRED 2023-06-02
• [x] WoRMS Placozoa phylum Placozoa kingdom Animalia = REPAIRED 2023-06-02
• [x] WoRMS Priapulida phylum Priapulida kingdom Animalia = REPAIRED 2023-06-02
• [x] WoRMS Remipedia class Remipedia phylum Arthropoda = REPAIRED 2023-06-02
• [x] WoRMS Staurozoa class Staurozoa phylum Cnidaria = REPAIRED 2023-06-02
• [x] WoRMS Strepsiptera order Strepsiptera class Insecta = REPAIRED 2023-06-02
• [x] WoRMS Tantulocarida class Tantulocarida phylum Arthropoda = FIXED 2023-06-06
• [x] WoRMS Thermosbaenacea order Thermosbaenacea class Malacostraca = REPAIRED 2023-06-02
• [x] WoRMS Zoantharia order Zoantharia subclass Hexacorallia = REPAIRED 2023-06-02

For attention of @mdoering & @gdower 2 of 20 failed to be repaired via Sectors tool and Assembly tool (it's according to the Sectors report)

• WoRMS Brachypoda = FIXED by Geoff, 2023-06-06
• WoRMS Tantulocarida = FIXED by Geoff, 2023-06-06 (synced 2023-06-06)

[gdower]

I compared metadata for WoRMS creators, editors and contributors between this month and last month, because some WoRMS GSDs were missing editors. I think WoRMS primarily uses editors and not creators, so having no creators might not be a problem. If it says both currently no editors and editor mismatch, that indicates that the GSD previously had editors and doesn't anymore.

WoRMS Porifera: https://www.checklistbank.org/dataset/1044/about currently no creators

WoRMS Cumacea: https://www.checklistbank.org/dataset/1058/about currently no creators

WoRMS Ophiuroidea: https://www.checklistbank.org/dataset/1059/about currently no creators

WoRMS Bryozoa: https://www.checklistbank.org/dataset/1081/about currently no creators currently no editors currently no contributors editor mismatch contributor mismatch

WoRMS Nemertea: https://www.checklistbank.org/dataset/1085/about currently no creators editor mismatch contributor mismatch

WoRMS Bochusacea: https://www.checklistbank.org/dataset/1086/about currently no creators

WoRMS Brachypoda: https://www.checklistbank.org/dataset/1087/about currently no creators

WoRMS Mystacocarida: https://www.checklistbank.org/dataset/1088/about currently no creators

WoRMS Polychaeta: https://www.checklistbank.org/dataset/1090/about currently no creators currently no editors editor mismatch contributor mismatch

WoRMS Remipedia: https://www.checklistbank.org/dataset/1091/about currently no creators

WoRMS Tantulocarida: https://www.checklistbank.org/dataset/1092/about currently no creators

WoRMS Thermosbaenacea: https://www.checklistbank.org/dataset/1093/about currently no creators

WoRMS Isopoda: https://www.checklistbank.org/dataset/1094/about currently no creators

WoRMS Asteroidea: https://www.checklistbank.org/dataset/1095/about currently no creators

WoRMS Oligochaeta: https://www.checklistbank.org/dataset/1099/about currently no creators

WoRMS Xenoturbellida: https://www.checklistbank.org/dataset/1100/about currently no creators

WoRMS Strepsiptera: https://www.checklistbank.org/dataset/1103/about currently no creators

WoRMS Leptostraca: https://www.checklistbank.org/dataset/1105/about currently no creators

WoRMS Echinoidea: https://www.checklistbank.org/dataset/1106/about currently no creators editor mismatch contributor mismatch

WoRMS Holothuroidea: https://www.checklistbank.org/dataset/1107/about currently no creators

WoRMS Brachyura: https://www.checklistbank.org/dataset/1108/about currently no creators currently no editors currently no contributors

WoRMS Polycystina: https://www.checklistbank.org/dataset/1109/about currently no creators

WoRMS Tanaidacea: https://www.checklistbank.org/dataset/1110/about currently no creators

WoRMS Hydrozoa: https://www.checklistbank.org/dataset/1112/about currently no creators

WoRMS Gastrotricha: https://www.checklistbank.org/dataset/1122/about currently no creators

WoRMS Placozoa: https://www.checklistbank.org/dataset/1123/about currently no creators editor mismatch contributor mismatch

WoRMS Priapulida: https://www.checklistbank.org/dataset/1124/about currently no creators

WoRMS Gnathostomulida: https://www.checklistbank.org/dataset/1125/about currently no creators

WoRMS Monogenea: https://www.checklistbank.org/dataset/1126/about currently no creators

WoRMS Cestoda: https://www.checklistbank.org/dataset/1127/about currently no creators

WoRMS Trematoda: https://www.checklistbank.org/dataset/1128/about currently no creators

WoRMS Myxozoa: https://www.checklistbank.org/dataset/1129/about currently no creators

WoRMS Mollusca: https://www.checklistbank.org/dataset/1130/about currently no creators currently no editors editor mismatch contributor mismatch

WoRMS Octocorallia: https://www.checklistbank.org/dataset/1131/about currently no creators

WoRMS Chaetognatha: https://www.checklistbank.org/dataset/1132/about currently no creators

WoRMS Orthonectida: https://www.checklistbank.org/dataset/1149/about currently no creators

WoRMS Rhombozoa: https://www.checklistbank.org/dataset/1150/about currently no creators

WoRMS Merostomata: https://www.checklistbank.org/dataset/1152/about currently no creators

WoRMS Kinorhyncha: https://www.checklistbank.org/dataset/1153/about currently no creators contributor mismatch

WoRMS Cephalochordata: https://www.checklistbank.org/dataset/1154/about currently no creators

WoRMS Foraminifera: https://www.checklistbank.org/dataset/1157/about currently no creators editor mismatch contributor mismatch

WoRMS Ostracoda: https://www.checklistbank.org/dataset/1175/about currently no creators editor mismatch contributor mismatch

WoRMS Hexacoral: https://www.checklistbank.org/dataset/1176/about currently no creators

WoRMS Appendicularia: https://www.checklistbank.org/dataset/1178/about currently no creators

WoRMS Ceriantharia: https://www.checklistbank.org/dataset/1179/about currently no creators

WoRMS Ctenophora: https://www.checklistbank.org/dataset/1180/about currently no creators

WoRMS Cubozoa: https://www.checklistbank.org/dataset/1181/about currently no creators

WoRMS Loricifera: https://www.checklistbank.org/dataset/1182/about currently no creators

WoRMS PycnoBase: https://www.checklistbank.org/dataset/1183/about currently no creators

WoRMS Staurozoa: https://www.checklistbank.org/dataset/1184/about currently no creators

WoRMS Thaliacea: https://www.checklistbank.org/dataset/1185/about currently no creators

WoRMS Ascidiacea: https://www.checklistbank.org/dataset/1186/about currently no creators

WoRMS Scyphozoa: https://www.checklistbank.org/dataset/1188/about currently no creators

WoRMS Copepoda: https://www.checklistbank.org/dataset/1191/about currently no creators editor mismatch contributor mismatch

WoRMS Turbellarians: https://www.checklistbank.org/dataset/1193/about currently no creators

WoRMS Antipatharia: https://www.checklistbank.org/dataset/1194/about currently no creators

WoRMS Corallimorpharia: https://www.checklistbank.org/dataset/1195/about currently no creators editor mismatch

WoRMS Scleractinia: https://www.checklistbank.org/dataset/1196/about currently no creators editor mismatch contributor mismatch

WoRMS Zoantharia: https://www.checklistbank.org/dataset/1197/about currently no creators

WoRMS MilliBase: https://www.checklistbank.org/dataset/1200/about currently no creators editor mismatch contributor mismatch

WoRMS Amphipoda: https://www.checklistbank.org/dataset/1202/about currently no creators editor mismatch contributor mismatch

WoRMS Brachiopoda: https://www.checklistbank.org/dataset/2299/about currently no creators currently no editors editor mismatch contributor mismatch

WoRMS Crinoidea: https://www.checklistbank.org/dataset/2300/about currently no creators

WoRMS Euphausiacea: https://www.checklistbank.org/dataset/2301/about currently no creators

WoRMS Nemys: https://www.checklistbank.org/dataset/2302/about currently no creators currently no editors editor mismatch contributor mismatch

[bart-v]

Since we first want to get the citation exactly right (and the same as in WoRMS), we'll focus on the editors and correct order. See https://github.com/CatalogueOfLife/data/issues/454#issuecomment-1540306831

Later, we will be working on improving the creators and contributors

[yroskov]

@gdower, it looks like syncs of WoRMS Tantulocarida & WoRMS Brachypoda failed 2023-06-03:

https://www.checklistbank.org/catalogue/3/sector/sync?limit=200&offset=0&state=failed

[mdoering]

these are broken subjects, the sync has failed because of that. Its impossible to sync data from a source when the link is broken.

[yroskov]

Dear @bart-v, it looks like CoL didn't receive July 1st data (and notification via email). Is that correct?

[bart-v]

Correct, seems like a minor glitch. We've forced a new export now

[yroskov]

We got data now. Thanks!

[yroskov]

• [ ] CoL of Aug 2023 (2023-08-17): missing authors/editors in metadata (https://www.checklistbank.org/dataset?contributesTo=3&limit=50&offset=0&origin=external&origin=project)

• WoRMS Bryozoa

• WoRMS Mollusca

• WoRMS Nemys

[bart-v]

WoRMS Bryozoa, Mollusca, Nemys were indeed missing editors. Version 2023-09-01 will have the fix for Bryozoa

[yroskov]

Thanks!

[gdower]

@yroskov, WoRMS is imported and synced.

[yroskov]

• [ ] WoRMS export of 2023-09-01 in CLB: missing authors/editors in metadata

• [x] WoRMS Bryozoa: editor added

• [ ] WoRMS Mollusca: no creator/editor, only contributor, only contributor as "MolluscaBase eds." plus organization details

• [ ] WoRMS Nemys: no creator/editor, only contributor as "Nemys eds." plus organization details

[bart-v]

Argh, we treat "Nemys & MolluscaBase eds." as an institute not as a person, so they were ignored as editor. Will be fixed in next version 2023-10-01

[yroskov]

Yeah, now "citation" for these 2 checklists in CoL have no "authors". If you move "MolluscaBase eds." and "Nemys eds." in the field Editors, all should become fine in CoL.