CoL of December 2023

[yroskov]

• [x] WoRMS of 2023-12-01; imported 2023-12-04; synced 2023-12-05

• [x] ITIS of 2023-11-17; imported 2023-11-27; synced 2023-12-04; new version 2023-12-08; imported 2023-12-11; synced 2023-12-12

• [x] Scarabs of 2023-12-04; imported 2023-12-04; synced 2023-12-04

• [x] 3i Auchenorrhyncha imported 2023-12-07; synced 2023-12-08

• [x] Entiminae imported 2023-12-07; synced 2023-12-08

• [x] SF Isoptera imported 2023-12-07; synced 2023-12-07

• [x] SF Orthoptera imported 2023-12-11; synced 2023-12-11

• [x] WCO (Opiliones) imported 2023-12-07; synced 2023-12-07

• [x] WOL (Odonata) imported 2023-12-07; synced 2023-12-07

• [x] GLI ver. 1.1.23.336 / 2023-12-02; imported 2023-12-02; *synced 2023-12-12

• [ ] Gelechiidae (Lepidoptera) - no update

• [ ] Pterophoroidea (Lepidoptera) - no update

• [ ] Hepialidae (Lepidoptera) - no update

• [x] World Plants ver 18.2 of 2023-11-25; imported 2023-12-03; synced 2023-12-06

• [x] World Ferns ver 18.2 of 2023-11-25; imported 2023-11-30; synced 2023-12-04

• [x] Bryonames ver Nov 2023 / 2023-11-07; imported 2023-11-07; synced 2023-12-01; Dec 2023 / 2023-12-04; imported 2023-12-04; synced 2023-12-05

=============================

• Systema Dipterorum ver. 4.5 of Nov 2023 received 2023-11-16

• Conifers as a part of WFO - Nov?

• ScaleNet

• UCD in Nov?

• WCVP ver 11.0 / 2023-04-20

• LPSN

• Species Files via TW (in Nov - Dec) - check with Heidi on a new SF Permopsocida (39 paleospp)

• FishBase - ?

• Paris/DBTNT - ?

• Species Fungorum via API (should be confirmed by Paul)

• LDL Neuropterida

=============================

Filling gaps:

Suborder Symphyta (Hymenoptera) https://github.com/CatalogueOfLife/data/issues/579 Class/order Diplura https://github.com/CatalogueOfLife/data/issues/577 Order †Permopsocida (Insecta) https://github.com/CatalogueOfLife/data/issues/578 Family Promecheilidae (Tenebrionoidea, Coleoptera) https://github.com/CatalogueOfLife/data/issues/580

[yroskov]

• [ ] Phylum Chordata classification (id 279229): https://www.checklistbank.org/dataset/279229/classification

COL Checklist Chordata Higher Classification, ver 1.0 / 2023-11-27

https://github.com/CatalogueOfLife/testing/issues/186#issuecomment-1828650604

[yroskov]

• [x] Missing PaleoBioDB logo = FIXED 2023-11-29

[yroskov]

• [x] Overlap between WCVP-Fabaceae & WWW: https://github.com/CatalogueOfLife/data/issues/597

FIXED 2023-11-30, WCVP-Fabaceae ver. 2023v.4 / 2023-08-02 re-synced: https://github.com/CatalogueOfLife/testing/issues/202#issuecomment-1833986178

FIXED? (see below) = FIXED: confirmed in Assembly 8 genera appear only once in CoL.

[yroskov]

• [ ] self-synonymizes taxa caused by removal square brackets and changed subgenera handling (https://github.com/CatalogueOfLife/data/issues/598)

• [x] Systema Dipterorum - vanished subgenera (in sector config) = FIXED (i.e. subgenera brought back) 2023-12-05

• [ ] GLI - genera in square brackets

• [ ] 3i Auchenorrhynca - genera in square brackets

[yroskov]

PREVIEW release started 2023-12-06, 10:05 pm (server time) Finished as COL23.12, id 280858, 2023-12-06, 11:25 pm Deployed to the preview website 2023-12-07

CHECKS

Systema Dipterorum 148120 vs 147903 - ? = families & tribes like *FChironominae were blocked as taxa, but not as names! = FIXED 2023-12-07 ("Ignore" decision used, SD re-synced 2023-12-07). WCVP-Fabaceae 22623 vs 21088 = expected World Plants 193026 vs 193137 = expected

[yroskov]

PREVIEW release started 2023-12-07, 8:17 pm (server time) Finished as COL23.12, id 281024, 2023-12-07, 9:46 pm Deployed to the preview website 2023-12-07

[yroskov]

PREVIEW release started 2023-12-12, 8:14 pm (server time) with full set of updates Finished as COL23.12, id 281620, 2023-12-12, 9:39 pm Deployed to the preview website 2023-12-12

[yroskov]

• [ ] Outdated decisions (https://github.com/CatalogueOfLife/checklistbank/issues/1333#event-11233969229) aka new report Stale Decisions in CoL-3: 5312 names (COL23.12, id 281620)

https://www.checklistbank.org/catalogue/3/tasks

woops! There is no tool to delete all these decisions in CoL-3:

There is no report on outdated decisions in GSD Tasks (Species Fungorum plus as an example):

An experiment 2023-12-23:

All Ambig Syn outdated decisions deleted for Collembola.org in CoL-3 via Delete button, one by one. Collembola.org re-synced. Ambig Syn status is still appear in Assembly-CoL. Let see, what will be shown in the PREVIEW release.

Cleaned up names: Hypogastrura monticola
Onychiurus pseudofimetarius Sira elongata
Achorutes filiformis
Podura aquatilis
Sminthurides assimilis
Dicyrtomina minuta f. ornata
Onychiurus octopunctatus edenticulata

[yroskov]

PREVIEW release started 2023-12-13, 9:36 pm (server time) - cleaned up Ambig Syn decisions for Collembola.org Finished as COL23.12, id 281824, 2023-12-13 Deployed to the preview website 2023-12-14

CHECKED 2023-12-14:

All Ambig Syn outdated decisions deleted for Collembola.org. Re-synced. Ambig Syn status is still appear in Assembly-CoL

Ambiguos Synonym status is still stay with all "cleaned" names in Collembola.org.

I repeated the experiment today (2023-12-14). It looks like "delete" decision works:

[yroskov]

• [x] Outdated decisions - continue (https://github.com/CatalogueOfLife/checklistbank/issues/1333#event-11233969229) aka Stale Decisions in CoL-3: 5312 names (COL23.12, id 281620)

Cleaned up names from GSDs 2023-12-14:

Collembola.org; re-synced 2023-12-14 Species Fungorum Plus; re-synced 2023-12-14 Scarabs; re-synced 2023-12-14 ThripsWiki; re-synced 2023-12-14 World Ferns; re-synced 2023-12-14 (World Plants) in progress

[yroskov]

PREVIEW release started 2023-12-15, 2:41 am (server time) Finished as COL23.12, id 281951, 2023-12-15 Deployed to the preview website 2023-12-15

2023-12-15: cleaned up names of 2023-12-14 with outdated decisions confirmed.

[yroskov]

For attention of @olafbanki, @mdoering: COL23.12, id 281951, 2023-12-15 is ready for deployment as CoL of December.

[yroskov]

Deployed to the portal 2023-12-27

[yroskov]

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