SD via TW: test report

[yroskov]

Systema Dipterorum ver. 5.0, 2024-01-08 processed via TW by DD; imported 2024-02-07

• Imported: 177,193 spp (vs 171,937 spp in 4.2.2, May 2023)

Summary of issues for @proceps extracted from the editorial report https://github.com/CatalogueOfLife/testing/issues/127#issuecomment-1934409065

[yroskov]

• [ ] Extinct flag is missing with species (0 spp now vs 3,792 in May 2023). (It is present with taxa of other ranks). Field Epoch in the source spreadsheet should be used for flagging extinct species.

[yroskov]

• [ ] Duplicated species. It might be a glitch in the original data (most possible. Confirmed!), or result of the import in TW

There are two reports with lists of duplicated species:

ACC-ACC species (same authors), 342: https://www.checklistbank.org/dataset/1101/duplicates?authorshipDifferent=false&category=binomial&limit=50&minSize=2&mode=STRICT&offset=0&status=accepted

There are 342 pairs of identical accepted species. For example:

Agadasys hexablepharis Whittington, 2000 Amblypsilopus qinlingensis Yang & Saigusa, 2005 Amplisegmentum venezuelensis Winterton, 2021 etc.

ACC-ACC species (different authors), 512: https://www.checklistbank.org/dataset/1101/duplicates?authorshipDifferent=true&category=binomial&limit=50&minSize=2&mode=STRICT&offset=0&status=accepted

There are many pairs of identical species which differ by bracketed and unbracketed authorstrings. For example:

Hoplacephala excisa (Villeneuve, 1913) vs Hoplacephala excisa Villeneuve, 1913 _see http://www.diptera.org/Nomenclator?op_name=&Name=Hoplacephala+excisa&op_author=&Author=&op_year=&Year=&op_family=&Family=&op_validname=&ValidName=&kind=&Sortfield=unsorted&sortorder=ascending&max=10&find=Start+Search_

Hoplacephala nigriventris (Villeneuve, 1913) vs Hoplacephala nigriventris Villeneuve, 1913 _see http://www.diptera.org/Nomenclator?op_name=&Name=Hoplacephala+nigriventris&op_author=&Author=&op_year=&Year=&op_family=&Family=&op_validname=&ValidName=&kind=&Sortfield=unsorted&sortorder=ascending&max=10&find=Start+Search_

Hoplacephala retroseta (Villeneuve, 1913) vs Hoplacephala retroseta Villeneuve, 1913 _see http://www.diptera.org/Nomenclator?op_name=&Name=Hoplacephala+retroseta&op_author=&Author=&op_year=&Year=&op_family=&Family=&op_validname=&ValidName=&kind=&Sortfield=unsorted&sortorder=ascending&max=10&find=Start+Search_

Huttonobesseria verecunda (Hutton, 1901) vs Huttonobesseria verecunda Hutton, 1901

Hystricia cuestae (Engel, 1920) vs Hystricia cuestae Engel, 1920

Isomyia pseudolucilia (Malloch, 1928) vs Isomyia pseudolucilia Malloch, 1928 etc.

Plus, there are 10 pairs of identical accepted species in this report. Full list (differently spelled authors!):

Empis (Polyblepharis) fedtschenkoi Shasmshev, 2023 = Shamshev vs Shasmshev
Empis (Polyblepharis) hirsutitarsis Shamshev, 2023 Empis (Polyblepharis) sogdiensis Shamshev, 2023 Empis (Polyblepharis) sogdiensis Shasmshev, 2023

Holops anarayae Barahona-Segovia, 2021 = Baharona-Segovia vs Barahona-Segovia Holops grezi Barahona-Segovia, 2021 Holops pullomen Baharona-Segovia, 2021 Physoconops tentenvilu Baharona-Segovia, 2020

Paraclius brooksi Soares, Capellari & Ale-Rocha, 2023 = Soares, Capellari & Ale-Rocha, 2023: 176 vs Soares, Runyon & Capellari, 2023: 166

Polleniopsis bomdilaensis Bharti & Verves, 2016 = Bharti & Verves, 2015: 1 vs Bharti & Verves, 2016: 1

[yroskov]

• [ ] Unparsable Authorship, 15: majority of cases are authorstrings with split name Gonz ález in authorstrings:

https://www.checklistbank.org/dataset/1101/names?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&issue=unparsable%20authorship&limit=50&offset=0

[yroskov]

• [ ] Unusual Name Characters, 28: incomplete trinomial names like Sargus infuscatus var. [sic] Scopoli, 1763 (all synonyms): https://www.checklistbank.org/dataset/1101/names?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&issue=unusual%20name%20characters&limit=50&offset=0

@gdower, there is an idea why this happened. TW exported a name as a string Sargus infuscatus var. [sic] minor (i.e. with added portion [sic]). Parser recognize it as a quadrinomial and CLB, probably, cut off third epithet.

[yroskov]

• [ ] Inconsistent Name, 840: incomplete trinomial names like Aedes subsp. holocinctus Edwards, 1941, Aedes var. var.hebrideus Edwards, 1926 and Amiota f. furcata Okada, 1960 (all synonyms). There are also names with var. var. portion. = "var. var. names" most possibly caused by TW exporter

https://www.checklistbank.org/dataset/1101/names?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&issue=inconsistent%20name&limit=50&offset=0

@gdower, in the case of "var. var. names" probably is also a cut of quadrinomial: if TW exported a name as a string Aedes variegatus var. var. hebrideus (i.e. with added portion var.). Somewhere (in parser or in CLB) the quadrinomial is shortened.

[yroskov]

• [ ] Rank Name Suffix Conflict, 2254: (if it’s true and helpful):

https://www.checklistbank.org/dataset/1101/names?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&issue=rank%20name%20suffix%20conflict&limit=50&offset=0

[yroskov]

• [ ] Multi Word Monomial, 1: species name Muscinae ariciaeformes Bezzi & Stein, 1907 is interpreted as a synonym in a rank of subfamily (parent Diptera > Muscidae > Muscinae > Muscini) = blocked in CoL https://www.checklistbank.org/dataset/1101/names?facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=authorshipYear&facet=extinct&facet=environment&facet=origin&issue=multi%20word%20monomial&limit=50&offset=0

[proceps]

Unparsable authorship, those probably have strange characters in the original DB: Megaselia neocorynurae González, Brown & Ospina, 2002

[proceps]

Unusual Name Characters, 28: incomplete trinomial names like Sargus infuscatus var. -- This looks like the parser error. The name is complete in TW.

[proceps]

Inconsistent Name, 840: incomplete trinomial names like Aedes subsp. holocinctus Edwards, 1941 --- Incomplete data in the original DB.