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Catchxu / STANDS

Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS
https://catchxu.github.io/STANDS/
GNU General Public License v3.0
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INSTALL INSSUES #1

Closed chhatbarchintan closed 1 month ago

chhatbarchintan commented 2 months ago

Thanks for this interesting package. I would like to try it out on visiumHD data. I have installation issues...i used the instructions i got installation error.

Processing dependencies for stands==1.0.0 Searching for sklearn>=1.2.0 Reading https://pypi.org/simple/sklearn/ No local packages or working download links found for sklearn>=1.2.0 error: Could not find suitable distribution for Requirement.parse('sklearn>=1.2.0')

since sklearn is deprecated and replaced by sci-kit learn is this the issue?

Catchxu commented 1 month ago

Thanks for your interests for our work! Your solution is correct. Actually, sklearn is an abbreviation of sci-kit learn. We ignored this when dealing with dependencies. Now we have updated setup.py.