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CederGroupHub / synthesis-action-retriever

Annotated dataset and scripts for automatic retrieval of materials synthesis actions.
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Question about the package version #1

Open mostly-harmless-earth opened 1 year ago

mostly-harmless-earth commented 1 year ago

when I test the synthesis-action-retriever, i got the error like this: (fsl) D:\LFSS\synthesis-action-retriever>python Python 3.8.16 | packaged by conda-forge | (default, Feb 1 2023, 15:53:35) [MSC v.1929 64 bit (AMD64)] on win32 Type "help", "copyright", "credits" or "license" for more information.

from synthesis_action_retriever.synthesis_action_retriever import SynthActionRetriever Traceback (most recent call last): File "", line 1, in File "D:\LFSS\synthesis-action-retriever\synthesis_action_retriever\synthesis_action_retriever.py", line 5, in from gensim.models import Word2Vec File "D:\aconcon\envs\fsl\lib\site-packages\gensim-3.8.0-py3.8-win-amd64.egg\gensim__init.py", line 5, in from gensim import parsing, corpora, matutils, interfaces, models, similarities, summarization, utils # noqa:F401 File "D:\aconcon\envs\fsl\lib\site-packages\gensim-3.8.0-py3.8-win-amd64.egg\gensim\corpora\init.py", line 6, in from .indexedcorpus import IndexedCorpus # noqa:F401 must appear before the other classes File "D:\aconcon\envs\fsl\lib\site-packages\gensim-3.8.0-py3.8-win-amd64.egg\gensim\corpora\indexedcorpus.py", line 15, in from gensim import interfaces, utils File "D:\aconcon\envs\fsl\lib\site-packages\gensim-3.8.0-py3.8-win-amd64.egg\gensim\interfaces.py", line 21, in from gensim import utils, matutils File "D:\aconcon\envs\fsl\lib\site-packages\gensim-3.8.0-py3.8-win-amd64.egg\gensim\matutils.py", line 1104, in from gensim._matutils import logsumexp, mean_absolute_difference, dirichlet_expectation File "init__.pxd", line 242, in init gensim._matutils ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 96 from C header, got 80 from PyObject

i think it might be the problem about the numpy, here is my list: Package Version

absl-py 1.4.0 astunparse 1.6.3 blis 0.7.9 cachetools 5.3.0 catalogue 2.0.8 certifi 2022.12.7 charset-normalizer 3.1.0 click 8.1.3 colorama 0.4.6 confection 0.0.4 cymem 2.0.7 gast 0.3.3 gensim 3.8.0 google-auth 2.17.2 google-auth-oauthlib 1.0.0 google-pasta 0.2.0 grpcio 1.54.0rc1 h5py 2.10.0 idna 3.4 importlib-metadata 6.1.0 Jinja2 3.1.2 Keras-Preprocessing 1.1.2 langcodes 3.3.0 Markdown 3.4.3 MarkupSafe 2.1.2 murmurhash 1.0.9 numpy 1.16.0 oauthlib 3.2.2 operations-extractor 4.0.0 opt-einsum 3.3.0 packaging 23.0 pathy 0.10.1 pip 23.0.1 preshed 3.0.8 protobuf 4.22.1 pyasn1 0.5.0rc2 pyasn1-modules 0.3.0rc1 pydantic 1.10.7 regex 2023.3.23 requests 2.28.2 requests-oauthlib 1.3.1 rsa 4.9 scipy 1.4.1 setuptools 67.6.1 six 1.16.0 smart-open 6.3.0 spacy 4.0.0.dev0 spacy-legacy 3.0.12 spacy-loggers 1.0.4 srsly 2.4.6 tensorboard 2.12.1 tensorboard-data-server 0.7.0 tensorboard-plugin-wit 1.8.1 tensorflow 2.3.0 tensorflow-estimator 2.3.0 termcolor 2.2.0 thinc 9.0.0.dev3 tqdm 4.65.0 typer 0.7.0 typing_extensions 4.5.0 urllib3 1.26.15 wasabi 1.1.1 Werkzeug 2.2.3 wheel 0.40.0 wrapt 1.15.0 zipp 3.15.0

I am wondering what version is correct for the installation. Thank you so much.

kevcruse96 commented 7 months ago

Hi there, many apologies for never responding to this! Yes, this seems to be related to the numpy version... numpy==1.18.5 works for my instance.