Batch 132 is throwing an error, but the output files are filling up ok (/imaging/analysis/2010_05_18_Malaria_Liver_Infection_Bhatia_Lab/Analysis/2015_12_08_Thailand_Nil_v2/txt_output).
<type 'exceptions.AttributeError'> Python 2.7.2: /imaging/analysis/CPCluster/CellProfiler-2.0/builds/redhat_6/bin/python
Wed Dec 9 00:29:08 2015
A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.
/imaging/docs/People/imageweb/batchprofiler/BatchProfiler/ViewBatch.py in ()
747
748 with bputilities.CellProfilerContext():
749 doc = ViewBatchDoc()
=> 750 doc.build()
751 doc.render()
doc = <bpformdata.ViewBatchDoc object>, doc.build = <bound method ViewBatchDoc.build of <bpformdata.ViewBatchDoc object>>
/imaging/docs/People/imageweb/batchprofiler/BatchProfiler/ViewBatch.py in build(self=<bpformdata.ViewBatchDoc object>)
67 self.build_submit_run()
68 else:
=> 69 self.build_batch()
70
71 def read_batch(self):
self = <bpformdata.ViewBatchDoc object>, self.build_batch = <bound method ViewBatchDoc.build_batch of <bpformdata.ViewBatchDoc object>>
/imaging/docs/People/imageweb/batchprofiler/BatchProfiler/ViewBatch.py in build_batch(self=<bpformdata.ViewBatchDoc object>)
208 self.build_summary_table()
209 self.build_summary_buttons()
=> 210 self.build_database_scripts()
211 with self.tag("div", style='clear:both; padding-top:10px'):
212 self.build_job_table()
self = <bpformdata.ViewBatchDoc object>, self.build_database_scripts = <bound method ViewBatchDoc.build_database_scripts of <bpformdata.ViewBatchDoc object>>
/imaging/docs/People/imageweb/batchprofiler/BatchProfiler/ViewBatch.py in build_database_scripts(self=<bpformdata.ViewBatchDoc object>)
384 run, task, task_status = sql_jobs.sql_file_job_and_status(
385 self.my_batch.batch_id,
=> 386 RunBatch.batch_script_file(filename))
387 status = None if task_status is None else task_status.status
388 with self.tag("tr"):
global RunBatch = <module 'RunBatch' from '/imaging/docs/People/imageweb/batchprofiler/BatchProfiler/RunBatch.py'>, RunBatch.batch_script_file = <function batch_script_file>, filename = 'SQL__Per_Well_SETUP.SQL'
/imaging/docs/People/imageweb/batchprofiler/BatchProfiler/sql_jobs.py in sql_file_job_and_status(batch_id=132, sql_file='batch_SQL__Per_Well_SETUP.SQL')
54 returns latest job or None if not submitted
55 """
=> 56 batch = RunBatch.select(batch_id)
57 run = RunBatch.BPSQLRun.select_by_sql_filename(batch, sql_file)
58 if run is None:
batch undefined, global RunBatch = <module 'RunBatch' from '/imaging/docs/People/imageweb/batchprofiler/BatchProfiler/RunBatch.py'>, RunBatch.select undefined, batch_id = 132
<type 'exceptions.AttributeError'>: 'module' object has no attribute 'select'
args = ("'module' object has no attribute 'select'",)
message = "'module' object has no attribute 'select'"
Batch 132 is throwing an error, but the output files are filling up ok (/imaging/analysis/2010_05_18_Malaria_Liver_Infection_Bhatia_Lab/Analysis/2015_12_08_Thailand_Nil_v2/txt_output).