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CellProfiler / CellProfiler-Analyst

Open-source software for exploring and analyzing large, high-dimensional image-derived data.
http://cellprofileranalyst.org
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Dimension Reduction issuesCPA Dimension Reduction issues: #14

Closed dlogan closed 8 years ago

dlogan commented 12 years ago

I was curious what the mysterious "Dimension Reduction" button did. Silly me...

(I'd say this issue is low priority, since there is no documentation about what this does, so there is no implied warranty)

This was using CPA compiled 11710 on Mac 10.6.8

To reproduce:

Process: CPAnalyst [50369] Path: /Applications/CPAnalyst.app/Contents/MacOS/CPAnalyst Identifier: org.pythonmac.unspecified.CPAnalyst Version: 0.0.0 (0.0.0) Code Type: X86 (Native) Parent Process: launchd [2684]

Date/Time: 2012-02-24 11:15:16.001 -0500 OS Version: Mac OS X 10.6.8 (10K549) Report Version: 6

Interval Since Last Report: 119230 sec Crashes Since Last Report: 9 Per-App Interval Since Last Report: 177559 sec Per-App Crashes Since Last Report: 1 Anonymous UUID: 55F89358-6582-4D77-8DB6-7FEE481104C1

Exception Type: EXC_BAD_ACCESS (SIGBUS) Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000 Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Application Specific Information:

Java information: Exception type: Bus Error (0xa) at pc=0000000003286707

Java VM: Java HotSpot(TM) Client VM (20.1-b02-384 mixed mode macosx-x86)

Current thread (0000000044009c00): JavaThread "Thread-1" daemon [_thread_in_native, id=-1600158400, stack(00000000bf800000,00000000c0000000)] Stack: [00000000bf800000,00000000c0000000]

Java Threads: ( => current thread ) 000000004481bc00 JavaThread "Thread-3" daemon [_thread_in_native, id=-1318584320, stack(00000000b1600000,00000000b1680000)] =>0000000044009c00 JavaThread "Thread-1" daemon [_thread_in_native, id=-1600158400, stack(00000000bf800000,00000000c0000000)] 0000000044807000 JavaThread "Low Memory Detector" daemon [_thread_blocked, id=-1320505344, stack(00000000b13ab000,00000000b14ab000)] 0000000045001000 JavaThread "C1 CompilerThread0" daemon [_thread_blocked, id=-1321562112, stack(00000000b12a9000,00000000b13a9000)] 0000000045000000 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=-1322618880, stack(00000000b11a7000,00000000b12a7000)] 0000000044008400 JavaThread "Surrogate Locker Thread (Concurrent GC)" daemon [_thread_blocked, id=-1323675648, stack(00000000b10a5000,00000000b11a5000)] 0000000044003000 JavaThread "Finalizer" daemon [_thread_blocked, id=-1324732416, stack(00000000b0fa3000,00000000b10a3000)] 0000000044002000 JavaThread "Reference Handler" daemon [_thread_blocked, id=-1325789184, stack(00000000b0ea1000,00000000b0fa1000)] 000000001b801c00 JavaThread "main" [_thread_in_native, id=-1340583936, stack(00000000b0105000,00000000b0185000)] Other Threads: 000000001b9e4800 VMThread [stack: 00000000b0d9f000,00000000b0e9f000] [id=-1326845952] 0000000044810800 WatcherThread [stack: 00000000b14fe000,00000000b15fe000] [id=-1319116800]

VM state:not at safepoint (normal execution) VM Mutex/Monitor currently owned by a thread: None

Heap par new generation total 14784K, used 0K [000000001e190000, 000000001f190000, 0000000022190000) eden space 13184K, 0% used [000000001e190000, 000000001e190000, 000000001ee70000) from space 1600K, 0% used [000000001ee70000, 000000001ee70000, 000000001f000000) to space 1600K, 0% used [000000001f000000, 000000001f000000, 000000001f190000) concurrent mark-sweep generation total 49152K, used 5070K [0000000022190000, 0000000025190000, 000000003e190000) concurrent-mark-sweep perm gen total 18660K, used 11121K [000000003e190000, 000000003f3c9000, 0000000042190000)

Code Cache [000000001c101000, 000000001c352000, 000000001e101000) total_blobs=1145 nmethods=1010 adapters=78 free_code_cache=31135936 largest_free_block=256

Virtual Machine Arguments: JVM Args: -Dloci.bioformats.loaded=true -Xmx512m -Dplugins.dir=/Users/dlogan/Downloads/ImageJ_plugins -Djava.awt.headless=true Java Command: Launcher Type: generic Physical Memory: Page Size = 4k, Total = 4096M, Free = 8M

Thread 0 Crashed: Dispatch queue: com.apple.main-thread 0 org.python.python 0x03286707 PyUnicodeUCS2_AsWideChar + 71 1 core.so 0x169c4fd9 wxString_in_helper(_object) + 223 2 controls.so 0x17a53602 wxPyPickerBase::GetPickerStyle(long) const + 162470 3 org.python.python 0x032c54bb PyEval_EvalFrameEx + 21131 4 org.python.python 0x032c73fa PyEval_EvalCodeEx + 2042 5 org.python.python 0x032c53a1 PyEval_EvalFrameEx + 20849 6 org.python.python 0x032c73fa PyEval_EvalCodeEx + 2042 7 org.python.python 0x0323cc12 function_call + 162 8 org.python.python 0x0320a305 PyObject_Call + 85 9 org.python.python 0x0321cbf6 instancemethod_call + 422 10 org.python.python 0x0320a305 PyObject_Call + 85 11 org.python.python 0x032bf29e PyEval_CallObjectWithKeywords + 78 12 core.so 0x169cbb16 wxPyCallback::EventThunker(wxEvent&) + 234 13 libwxmacud-2.8.0.dylib 0x16bc785e wxEvtHandler::ProcessEventIfMatches(wxEventTableEntryBase const&, wxEvtHandler, wxEvent&) + 108 14 libwx_macud-2.8.0.dylib 0x16bc7904 wxEvtHandler::SearchDynamicEventTable(wxEvent&) + 80 15 libwx_macud-2.8.0.dylib 0x16bc8703 wxEvtHandler::ProcessEvent(wxEvent&) + 225 16 libwxmacud-2.8.0.dylib 0x16c977cd wxAppBase::SendIdleEvents(wxWindow, wxIdleEvent&) + 133 17 libwx_macud-2.8.0.dylib 0x16c97d09 wxAppBase::ProcessIdle() + 127 18 libwx_macud-2.8.0.dylib 0x16bead05 wxApp::MacDoOneEvent() + 199 19 libwx_macud-2.8.0.dylib 0x16c05232 wxEventLoop::Dispatch() + 32 20 libwx_macud-2.8.0.dylib 0x16c02cf8 wxDialog::DoShowModal() + 188 21 libwx_macud-2.8.0.dylib 0x16c02e63 wxDialog::Show(bool) + 83 22 libwx_macud-2.8.0.dylib 0x16c02c30 wxDialog::ShowModal() + 54 23 windows.so 0x178db49c wxPyPreviewControlBar::SetZoomControl(int) + 69010 24 org.python.python 0x032c54bb PyEval_EvalFrameEx + 21131 25 org.python.python 0x032c73fa PyEval_EvalCodeEx + 2042 26 org.python.python 0x032c53a1 PyEval_EvalFrameEx + 20849 27 org.python.python 0x032c73fa PyEval_EvalCodeEx + 2042 28 org.python.python 0x0323cc12 function_call + 162 29 org.python.python 0x0320a305 PyObject_Call + 85 30 org.python.python 0x032bf29e PyEval_CallObjectWithKeywords + 78 31 org.python.python 0x032ec040 PyErr_PrintEx + 208 32 org.python.python 0x032ec332 PyErr_Print + 18 33 core.so 0x169cbd75 wxPyCallback::EventThunker(wxEvent&) + 841 34 libwxmacud-2.8.0.dylib 0x16bc785e wxEvtHandler::ProcessEventIfMatches(wxEventTableEntryBase const&, wxEvtHandler, wxEvent&) + 108 35 libwx_macud-2.8.0.dylib 0x16bc7904 wxEvtHandler::SearchDynamicEventTable(wxEvent&) + 80 36 libwx_macud-2.8.0.dylib 0x16bc8703 wxEvtHandler::ProcessEvent(wxEvent&) + 225 37 libwx_macud-2.8.0.dylib 0x16d1bfcd wxWindowBase::TryParent(wxEvent&) + 101 38 libwx_macud-2.8.0.dylib 0x16bc86cf wxEvtHandler::ProcessEvent(wxEvent&) + 173 39 libwx_macud-2.8.0.dylib 0x16d1bfcd wxWindowBase::TryParent(wxEvent&) + 101 40 libwx_macud-2.8.0.dylib 0x16bc86cf wxEvtHandler::ProcessEvent(wxEvent&) + 173 41 libwx_macud-2.8.0.dylib 0x16d1bfcd wxWindowBase::TryParent(wxEvent&) + 101 42 libwx_macud-2.8.0.dylib 0x16bc86cf wxEvtHandler::ProcessEvent(wxEvent&) + 173 43 libwx_macud-2.8.0.dylib 0x16d1bfcd wxWindowBase::TryParent(wxEvent&) + 101 44 libwx_macud-2.8.0.dylib 0x16bc86cf wxEvtHandler::ProcessEvent(wxEvent&) + 173 45 libwx_macud-2.8.0.dylib 0x16bfa505 wxControl::ProcessCommand(wxCommandEvent&) + 27 46 libwxmacud-2.8.0.dylib 0x16bf514a wxButton::MacControlHit(void, void_) + 62 47 libwxmacud-2.8.0.dylib 0x16c5f9eb wxWindow::wxWindow(wxWindow, int, wxPoint const&, wxSize const&, long, wxString const&) + 1127 48 libwxmacud-2.8.0.dylib 0x16c6034d wxMacWindowEventHandler(OpaqueEventHandlerCallRef, OpaqueEventRef, void) + 197 49 com.apple.HIToolbox 0x977d0c2f DispatchEventToHandlers(EventTargetRec, OpaqueEventRef, HandlerCallRec) + 1567 50 com.apple.HIToolbox 0x977cfef6 SendEventToEventTargetInternal(OpaqueEventRef, OpaqueEventTargetRef, HandlerCallRec) + 411 51 com.apple.HIToolbox 0x977f27f3 SendEventToEventTarget + 52 52 com.apple.HIToolbox 0x97841cce SendControlHit(HIView, OpaqueEventRef, short, unsigned long) + 296 53 com.apple.HIToolbox 0x97841b4f HIView::NotifyControlHit(OpaqueEventRef, short, unsigned long) + 45 54 com.apple.HIToolbox 0x978a665f HIView::ClickInternal(CGPoint const&, unsigned long, void ()(OpaqueControlRef, short), OpaqueEventRef, bool) + 245 55 com.apple.HIToolbox 0x978a7c18 HIView::ClickSelf(OpaqueEventRef) + 368 56 com.apple.HIToolbox 0x977e3af9 HIView::EventHandler(OpaqueEventHandlerCallRef, OpaqueEventRef, void) + 2363 57 com.apple.HIToolbox 0x977d0c2f DispatchEventToHandlers(EventTargetRec, OpaqueEventRef, HandlerCallRec) + 1567 58 com.apple.HIToolbox 0x977cfef6 SendEventToEventTargetInternal(OpaqueEventRef, OpaqueEventTargetRef, HandlerCallRec) + 411 59 com.apple.HIToolbox 0x977f27f3 SendEventToEventTarget + 52 60 com.apple.HIToolbox 0x97840b8e HIView::Click(OpaqueEventRef) + 480 61 com.apple.HIToolbox 0x9784095b HandleClickAsHIView(OpaqueWindowPtr, OpaqueEventRef) + 151 62 com.apple.HIToolbox 0x9783f238 HandleWindowClick(OpaqueWindowPtr, Point, short, unsigned long, OpaqueEventRef) + 491 63 com.apple.HIToolbox 0x9783ed3b HandleMouseEvent(OpaqueEventHandlerCallRef, OpaqueEventRef) + 786 64 com.apple.HIToolbox 0x9783e652 StandardWindowEventHandler(OpaqueEventHandlerCallRef, OpaqueEventRef, void) + 93 65 com.apple.HIToolbox 0x977d0c2f DispatchEventToHandlers(EventTargetRec, OpaqueEventRef, HandlerCallRec) + 1567 66 com.apple.HIToolbox 0x977cfef6 SendEventToEventTargetInternal(OpaqueEventRef, OpaqueEventTargetRef, HandlerCallRec) + 411 67 com.apple.HIToolbox 0x977f27f3 SendEventToEventTarget + 52 68 com.apple.HIToolbox 0x9780434f ToolboxEventDispatcherHandler(OpaqueEventHandlerCallRef, OpaqueEventRef, void) + 1257 69 com.apple.HIToolbox 0x977d1080 DispatchEventToHandlers(EventTargetRec, OpaqueEventRef, HandlerCallRec) + 2672 70 com.apple.HIToolbox 0x977cfef6 SendEventToEventTargetInternal(OpaqueEventRef, OpaqueEventTargetRef, HandlerCallRec_) + 411 71 com.apple.HIToolbox 0x977f27f3 SendEventToEventTarget + 52 72 libwxmacud-2.8.0.dylib 0x16beabee wxApp::MacHandleOneEvent(void) + 34 73 libwx_macud-2.8.0.dylib 0x16beacb6 wxApp::MacDoOneEvent() + 120 74 libwx_macud-2.8.0.dylib 0x16c05232 wxEventLoop::Dispatch() + 32 75 libwx_macud-2.8.0.dylib 0x16cc12ed wxEventLoopManual::Run() + 97 76 libwx_macud-2.8.0.dylib 0x16c974a2 wxAppBase::MainLoop() + 76 77 core.so 0x169c28c4 wxPyApp::MainLoop() + 52 78 core.so 0x16a1003e wxIntersectRect(wxRect_, wxRect) + 221628 79 org.python.python 0x032c54bb PyEval_EvalFrameEx + 21131 80 org.python.python 0x032c73fa PyEval_EvalCodeEx + 2042 81 org.python.python 0x0323cc12 function_call + 162 82 org.python.python 0x0320a305 PyObject_Call + 85 83 org.python.python 0x0321cbf6 instancemethod_call + 422 84 org.python.python 0x0320a305 PyObject_Call + 85 85 org.python.python 0x032c3a06 PyEval_EvalFrameEx + 14294 86 org.python.python 0x032c6bce PyEval_EvalFrameEx + 27038 87 org.python.python 0x032c73fa PyEval_EvalCodeEx + 2042 88 org.python.python 0x032c7587 PyEval_EvalCode + 87 89 org.python.python 0x032eba08 PyRun_FileExFlags + 168 90 org.python.python 0x032ba68e builtin_execfile + 398 91 org.python.python 0x032c5310 PyEval_EvalFrameEx + 20704 92 org.python.python 0x032c73fa PyEval_EvalCodeEx + 2042 93 org.python.python 0x032c53a1 PyEval_EvalFrameEx + 20849 94 org.python.python 0x032c73fa PyEval_EvalCodeEx + 2042 95 org.python.python 0x032c7587 PyEval_EvalCode + 87 96 org.python.python 0x032eba08 PyRun_FileExFlags + 168 97 org.python.python 0x032ec933 PyRun_SimpleFileExFlags + 867 98 org.python.python 0x032ecab8 PyRun_SimpleFile + 40 99 ...onmac.unspecified.CPAnalyst 0x0000572d start + 16353 100 ...onmac.unspecified.CPAnalyst 0x00005d8f main + 1551 101 ...onmac.unspecified.CPAnalyst 0x00001781 start + 53

Thread 1: Dispatch queue: com.apple.libdispatch-manager 0 libSystem.B.dylib 0x97f6b382 kevent + 10 1 libSystem.B.dylib 0x97f6ba9c _dispatch_mgr_invoke + 215 2 libSystem.B.dylib 0x97f6af59 _dispatch_queue_invoke + 163 3 libSystem.B.dylib 0x97f6acfe _dispatch_worker_thread2 + 240 4 libSystem.B.dylib 0x97f6a781 _pthread_wqthread + 390 5 libSystem.B.dylib 0x97f6a5c6 start_wqthread + 30

Thread 2: 0 libSystem.B.dylib 0x97f72aa2 __semwait_signal + 10 1 libSystem.B.dylib 0x97f7275e _pthread_cond_wait + 1191 2 libSystem.B.dylib 0x97f743f8 pthread_cond_wait$UNIX2003 + 73 3 org.python.python 0x0330241c PyThread_acquire_lock + 172 4 org.python.python 0x03307013 lock_PyThread_acquire_lock + 83 5 org.python.python 0x032c5310 PyEval_EvalFrameEx + 20704 6 org.python.python 0x032c73fa PyEval_EvalCodeEx + 2042 7 org.python.python 0x032c53a1 PyEval_EvalFrameEx + 20849 8 org.python.python 0x032c73fa PyEval_EvalCodeEx + 2042 9 org.python.python 0x032c53a1 PyEval_EvalFrameEx + 20849 10 org.python.python 0x032c73fa PyEval_EvalCodeEx + 2042 11 org.python.python 0x0323cc12 function_call + 162 12 org.python.python 0x0320a305 PyObject_Call + 85 13 org.python.python 0x032c2c8b PyEval_EvalFrameEx + 10843 14 org.python.python 0x032c6bce PyEval_EvalFrameEx + 27038 15 org.python.python 0x032c6bce PyEval_EvalFrameEx + 27038 16 org.python.python 0x032c73fa PyEval_EvalCodeEx + 2042 17 org.python.python 0x0323cc12 function_call + 162 18 org.python.python 0x0320a305 PyObject_Call + 85 19 org.python.python 0x0321cbf6 instancemethod_call + 422 20 org.python.python 0x0320a305 PyObject_Call + 85 21 org.python.python 0x032bf29e PyEval_CallObjectWithKeywords + 78 22 org.python.python 0x0330766c t_bootstrap + 76 23 libSystem.B.dylib 0x97f72259 _pthread_start + 345 24 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 3: Java: Exception Handler Thread 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libSystem.B.dylib 0x97fb0c78 mach_msg_server + 520 3 libjvm.dylib 0x1b3100eb jio_snprintf + 43803 4 libjvm.dylib 0x1b30ff80 jio_snprintf + 43440 5 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 6 libSystem.B.dylib 0x97f72259 _pthread_start + 345 7 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 4: Java: Gang worker#0 (Parallel GC Threads) 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b5824c9 JVM_RaiseSignal + 365377 3 libjvm.dylib 0x1b30f0e6 jio_snprintf + 39702 4 libjvm.dylib 0x1b576681 JVM_RaiseSignal + 316665 5 libjvm.dylib 0x1b576750 JVM_RaiseSignal + 316872 6 libjvm.dylib 0x1b30ec5d jio_snprintf + 38541 7 libjvm.dylib 0x1b323cbe jio_vsnprintf + 333 8 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 9 libSystem.B.dylib 0x97f72259 _pthread_start + 345 10 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 5: Java: Gang worker#1 (Parallel GC Threads) 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b5824c9 JVM_RaiseSignal + 365377 3 libjvm.dylib 0x1b30f0e6 jio_snprintf + 39702 4 libjvm.dylib 0x1b576681 JVM_RaiseSignal + 316665 5 libjvm.dylib 0x1b576750 JVM_RaiseSignal + 316872 6 libjvm.dylib 0x1b30ec5d jio_snprintf + 38541 7 libjvm.dylib 0x1b323cbe jio_vsnprintf + 333 8 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 9 libSystem.B.dylib 0x97f72259 _pthread_start + 345 10 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 6: Java: Gang worker#2 (Parallel GC Threads) 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b5824c9 JVM_RaiseSignal + 365377 3 libjvm.dylib 0x1b30f0e6 jio_snprintf + 39702 4 libjvm.dylib 0x1b576681 JVM_RaiseSignal + 316665 5 libjvm.dylib 0x1b576750 JVM_RaiseSignal + 316872 6 libjvm.dylib 0x1b30ec5d jio_snprintf + 38541 7 libjvm.dylib 0x1b323cbe jio_vsnprintf + 333 8 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 9 libSystem.B.dylib 0x97f72259 _pthread_start + 345 10 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 7: Java: Gang worker#3 (Parallel GC Threads) 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b5824c9 JVM_RaiseSignal + 365377 3 libjvm.dylib 0x1b30f0e6 jio_snprintf + 39702 4 libjvm.dylib 0x1b576681 JVM_RaiseSignal + 316665 5 libjvm.dylib 0x1b576750 JVM_RaiseSignal + 316872 6 libjvm.dylib 0x1b30ec5d jio_snprintf + 38541 7 libjvm.dylib 0x1b323cbe jio_vsnprintf + 333 8 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 9 libSystem.B.dylib 0x97f72259 _pthread_start + 345 10 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 8: Java: Gang worker#4 (Parallel GC Threads) 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b5824c9 JVM_RaiseSignal + 365377 3 libjvm.dylib 0x1b30f0e6 jio_snprintf + 39702 4 libjvm.dylib 0x1b576681 JVM_RaiseSignal + 316665 5 libjvm.dylib 0x1b576750 JVM_RaiseSignal + 316872 6 libjvm.dylib 0x1b30ec5d jio_snprintf + 38541 7 libjvm.dylib 0x1b323cbe jio_vsnprintf + 333 8 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 9 libSystem.B.dylib 0x97f72259 _pthread_start + 345 10 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 9: Java: Gang worker#5 (Parallel GC Threads) 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b5824c9 JVM_RaiseSignal + 365377 3 libjvm.dylib 0x1b30f0e6 jio_snprintf + 39702 4 libjvm.dylib 0x1b576681 JVM_RaiseSignal + 316665 5 libjvm.dylib 0x1b576750 JVM_RaiseSignal + 316872 6 libjvm.dylib 0x1b30ec5d jio_snprintf + 38541 7 libjvm.dylib 0x1b323cbe jio_vsnprintf + 333 8 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 9 libSystem.B.dylib 0x97f72259 _pthread_start + 345 10 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 10: Java: Gang worker#6 (Parallel GC Threads) 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b5824c9 JVM_RaiseSignal + 365377 3 libjvm.dylib 0x1b30f0e6 jio_snprintf + 39702 4 libjvm.dylib 0x1b576681 JVM_RaiseSignal + 316665 5 libjvm.dylib 0x1b576750 JVM_RaiseSignal + 316872 6 libjvm.dylib 0x1b30ec5d jio_snprintf + 38541 7 libjvm.dylib 0x1b323cbe jio_vsnprintf + 333 8 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 9 libSystem.B.dylib 0x97f72259 _pthread_start + 345 10 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 11: Java: Gang worker#7 (Parallel GC Threads) 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b5824c9 JVM_RaiseSignal + 365377 3 libjvm.dylib 0x1b30f0e6 jio_snprintf + 39702 4 libjvm.dylib 0x1b576681 JVM_RaiseSignal + 316665 5 libjvm.dylib 0x1b576750 JVM_RaiseSignal + 316872 6 libjvm.dylib 0x1b30ec5d jio_snprintf + 38541 7 libjvm.dylib 0x1b323cbe jio_vsnprintf + 333 8 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 9 libSystem.B.dylib 0x97f72259 _pthread_start + 345 10 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 12: Java: Gang worker#0 (Parallel CMS Threads) 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b5824c9 JVM_RaiseSignal + 365377 3 libjvm.dylib 0x1b30f0e6 jio_snprintf + 39702 4 libjvm.dylib 0x1b576681 JVM_RaiseSignal + 316665 5 libjvm.dylib 0x1b576750 JVM_RaiseSignal + 316872 6 libjvm.dylib 0x1b30ec5d jio_snprintf + 38541 7 libjvm.dylib 0x1b5dda92 JVM_RaiseSignal + 739594 8 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 9 libSystem.B.dylib 0x97f72259 _pthread_start + 345 10 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 13: Java: Gang worker#1 (Parallel CMS Threads) 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b5824c9 JVM_RaiseSignal + 365377 3 libjvm.dylib 0x1b30f0e6 jio_snprintf + 39702 4 libjvm.dylib 0x1b576681 JVM_RaiseSignal + 316665 5 libjvm.dylib 0x1b576750 JVM_RaiseSignal + 316872 6 libjvm.dylib 0x1b30ec5d jio_snprintf + 38541 7 libjvm.dylib 0x1b5dda92 JVM_RaiseSignal + 739594 8 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 9 libSystem.B.dylib 0x97f72259 _pthread_start + 345 10 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 14: Java: Concurrent Mark-Sweep GC Thread 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b582599 JVM_RaiseSignal + 365585 3 libjvm.dylib 0x1b58293c JVM_RaiseSignal + 366516 4 libjvm.dylib 0x1b57669b JVM_RaiseSignal + 316691 5 libjvm.dylib 0x1b576750 JVM_RaiseSignal + 316872 6 libjvm.dylib 0x1b30ec5d jio_snprintf + 38541 7 libjvm.dylib 0x1b3be0c9 JVM_Close + 13205 8 libjvm.dylib 0x1b3be031 JVM_Close + 13053 9 libjvm.dylib 0x1b329d73 jio_vsnprintf + 25090 10 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 11 libSystem.B.dylib 0x97f72259 _pthread_start + 345 12 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 15: Java: VM Thread 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b582599 JVM_RaiseSignal + 365585 3 libjvm.dylib 0x1b58293c JVM_RaiseSignal + 366516 4 libjvm.dylib 0x1b57669b JVM_RaiseSignal + 316691 5 libjvm.dylib 0x1b576750 JVM_RaiseSignal + 316872 6 libjvm.dylib 0x1b30ec5d jio_snprintf + 38541 7 libjvm.dylib 0x1b390564 JVM_Lseek + 149378 8 libjvm.dylib 0x1b390214 JVM_Lseek + 148530 9 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 10 libSystem.B.dylib 0x97f72259 _pthread_start + 345 11 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 16: Java: Reference Handler 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b5824c9 JVM_RaiseSignal + 365377 3 libjvm.dylib 0x1b30f0e6 jio_snprintf + 39702 4 libjvm.dylib 0x1b57e82c JVM_RaiseSignal + 349860 5 libjvm.dylib 0x1b5bdb5f JVM_RaiseSignal + 608727 6 libjvm.dylib 0x1b39d50a JVM_MonitorWait + 196 7 libjvmlinkage.dylib 0x1b176e75 JVM_MonitorWait + 69 8 ??? 0x1c10b9d9 0 + 470858201 9 ??? 0x1c103e31 0 + 470826545 10 ??? 0x1c103e31 0 + 470826545 11 ??? 0x1c101374 0 + 470815604 12 libjvm.dylib 0x1b3917aa JVM_Lseek + 154056 13 libjvm.dylib 0x1b391544 JVM_Lseek + 153442 14 libjvm.dylib 0x1b39d341 JVM_StartThread + 2726 15 libjvm.dylib 0x1b39d246 JVM_StartThread + 2475 16 libjvm.dylib 0x1b39d1d4 JVM_StartThread + 2361 17 libjvm.dylib 0x1b39d048 JVM_StartThread + 1965 18 libjvm.dylib 0x1b39cea7 JVM_StartThread + 1548 19 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 20 libSystem.B.dylib 0x97f72259 _pthread_start + 345 21 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 17: Java: Finalizer 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b5824c9 JVM_RaiseSignal + 365377 3 libjvm.dylib 0x1b30f0e6 jio_snprintf + 39702 4 libjvm.dylib 0x1b57e82c JVM_RaiseSignal + 349860 5 libjvm.dylib 0x1b5bdb5f JVM_RaiseSignal + 608727 6 libjvm.dylib 0x1b39d50a JVM_MonitorWait + 196 7 libjvmlinkage.dylib 0x1b176e75 JVM_MonitorWait + 69 8 ??? 0x1c10b9d9 0 + 470858201 9 ??? 0x1c103e31 0 + 470826545 10 ??? 0x1c103f97 0 + 470826903 11 ??? 0x1c103f97 0 + 470826903 12 ??? 0x1c101374 0 + 470815604 13 libjvm.dylib 0x1b3917aa JVM_Lseek + 154056 14 libjvm.dylib 0x1b391544 JVM_Lseek + 153442 15 libjvm.dylib 0x1b39d341 JVM_StartThread + 2726 16 libjvm.dylib 0x1b39d246 JVM_StartThread + 2475 17 libjvm.dylib 0x1b39d1d4 JVM_StartThread + 2361 18 libjvm.dylib 0x1b39d048 JVM_StartThread + 1965 19 libjvm.dylib 0x1b39cea7 JVM_StartThread + 1548 20 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 21 libSystem.B.dylib 0x97f72259 _pthread_start + 345 22 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 18: Java: Surrogate Locker Thread (Concurrent GC) 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b5824c9 JVM_RaiseSignal + 365377 3 libjvm.dylib 0x1b30f0e6 jio_snprintf + 39702 4 libjvm.dylib 0x1b576681 JVM_RaiseSignal + 316665 5 libjvm.dylib 0x1b576750 JVM_RaiseSignal + 316872 6 libjvm.dylib 0x1b30eba4 jio_snprintf + 38356 7 libjvm.dylib 0x1b3ad9d7 JVM_IsPrimitiveClass + 5991 8 libjvm.dylib 0x1b39d048 JVM_StartThread + 1965 9 libjvm.dylib 0x1b39cea7 JVM_StartThread + 1548 10 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 11 libSystem.B.dylib 0x97f72259 _pthread_start + 345 12 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 19: Java: Signal Dispatcher 0 libSystem.B.dylib 0x97f44b36 semaphore_wait_trap + 10 1 libjvm.dylib 0x1b3ae209 JVM_IsPrimitiveClass + 8089 2 libjvm.dylib 0x1b3adbf4 JVM_IsPrimitiveClass + 6532 3 libjvm.dylib 0x1b39d048 JVM_StartThread + 1965 4 libjvm.dylib 0x1b39cea7 JVM_StartThread + 1548 5 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 6 libSystem.B.dylib 0x97f72259 _pthread_start + 345 7 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 20: Java: C1 CompilerThread0 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b5824c9 JVM_RaiseSignal + 365377 3 libjvm.dylib 0x1b30f0e6 jio_snprintf + 39702 4 libjvm.dylib 0x1b576681 JVM_RaiseSignal + 316665 5 libjvm.dylib 0x1b576750 JVM_RaiseSignal + 316872 6 libjvm.dylib 0x1b30eba4 jio_snprintf + 38356 7 libjvm.dylib 0x1b3b4d30 JVM_Write + 288 8 libjvm.dylib 0x1b3af368 JVM_IsPrimitiveClass + 12536 9 libjvm.dylib 0x1b39d048 JVM_StartThread + 1965 10 libjvm.dylib 0x1b39cea7 JVM_StartThread + 1548 11 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 12 libSystem.B.dylib 0x97f72259 _pthread_start + 345 13 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 21: Java: Low Memory Detector 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b5824c9 JVM_RaiseSignal + 365377 3 libjvm.dylib 0x1b30f0e6 jio_snprintf + 39702 4 libjvm.dylib 0x1b576681 JVM_RaiseSignal + 316665 5 libjvm.dylib 0x1b576750 JVM_RaiseSignal + 316872 6 libjvm.dylib 0x1b30ec5d jio_snprintf + 38541 7 libjvm.dylib 0x1b3b0cf6 JVM_IsPrimitiveClass + 19078 8 libjvm.dylib 0x1b39d048 JVM_StartThread + 1965 9 libjvm.dylib 0x1b39cea7 JVM_StartThread + 1548 10 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 11 libSystem.B.dylib 0x97f72259 _pthread_start + 345 12 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 22: Java: VM Periodic Task Thread 0 libSystem.B.dylib 0x97f44afa mach_msg_trap + 10 1 libSystem.B.dylib 0x97f45267 mach_msg + 68 2 libjvm.dylib 0x1b582599 JVM_RaiseSignal + 365585 3 libjvm.dylib 0x1b582b2b JVM_RaiseSignal + 367011 4 libjvm.dylib 0x1b3b2dec JVM_IsPrimitiveClass + 27516 5 libjvm.dylib 0x1b30ed2d jio_snprintf + 38749 6 libSystem.B.dylib 0x97f72259 _pthread_start + 345 7 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 23: com.apple.CFSocket.private 0 libSystem.B.dylib 0x97f63ac6 select$DARWIN_EXTSN + 10 1 com.apple.CoreFoundation 0x95725c53 __CFSocketManager + 1091 2 libSystem.B.dylib 0x97f72259 _pthread_start + 345 3 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 24: 0 libSystem.B.dylib 0x97f72aa2 __semwait_signal + 10 1 libSystem.B.dylib 0x97f7275e _pthread_cond_wait + 1191 2 libSystem.B.dylib 0x97f743f8 pthread_cond_wait$UNIX2003 + 73 3 org.python.python 0x0330241c PyThread_acquire_lock + 172 4 org.python.python 0x03307013 lock_PyThread_acquire_lock + 83 5 org.python.python 0x032c5310 PyEval_EvalFrameEx + 20704 6 org.python.python 0x032c73fa PyEval_EvalCodeEx + 2042 7 org.python.python 0x032c53a1 PyEval_EvalFrameEx + 20849 8 org.python.python 0x032c73fa PyEval_EvalCodeEx + 2042 9 org.python.python 0x032c53a1 PyEval_EvalFrameEx + 20849 10 org.python.python 0x032c6bce PyEval_EvalFrameEx + 27038 11 org.python.python 0x032c73fa PyEval_EvalCodeEx + 2042 12 org.python.python 0x0323cc12 function_call + 162 13 org.python.python 0x0320a305 PyObject_Call + 85 14 org.python.python 0x0321cbf6 instancemethod_call + 422 15 org.python.python 0x0320a305 PyObject_Call + 85 16 org.python.python 0x032bf29e PyEval_CallObjectWithKeywords + 78 17 org.python.python 0x0330766c t_bootstrap + 76 18 libSystem.B.dylib 0x97f72259 _pthread_start + 345 19 libSystem.B.dylib 0x97f720de thread_start + 34

Thread 25: 0 libSystem.B.dylib 0x97f6a412 __workq_kernreturn + 10 1 libSystem.B.dylib 0x97f6a9a8 _pthread_wqthread + 941 2 libSystem.B.dylib 0x97f6a5c6 start_wqthread + 30

Thread 0 crashed with X86 Thread State (32-bit): eax: 0x0000005b ebx: 0x032866d1 ecx: 0x00000001 edx: 0xc0000002 edi: 0x183aaa3c esi: 0x00000000 ebp: 0xbfff9aa8 esp: 0xbfff9a80 ss: 0x00000023 efl: 0x00010282 eip: 0x03286707 cs: 0x0000001b ds: 0x00000023 es: 0x00000023 fs: 0x00000000 gs: 0x0000000f cr2: 0x00000000

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ljosa commented 11 years ago

We will try it and see if the problem is reproducible and easily fixable. If it seems to work for most people, we might add a warning that this is poorly tested functionality. If it doesn't work for anyone and can't be easily fixed we'll remove it.

dlogan commented 11 years ago

I just reproduced it -- meaning, it may work eventually, but the small example cpa dataset is now reporting that it will take 1 hour 45 minutes to complete (and rising). So I cancelled the DimRedux and got this error screenshot (since CPA crashed sometime after): http://cl.ly/image/0K1B3I2x3Q1m

daviddao commented 8 years ago

Discussion moved to #90