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CellProfiler / CellProfiler-Analyst

Open-source software for exploring and analyzing large, high-dimensional image-derived data.
http://cellprofileranalyst.org
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Image not found #50

Closed dlogan closed 10 years ago

dlogan commented 10 years ago

CPA (Windows compiled 2014-04-01) errors in Classifier when double-clicking on a thumbnail (which doesn't load either), trying to display standard 16-bit images from ImageXpress:

An error occurred in the program:
Exception: Image not found: "http://imageweb/images/CPALinks/bcb/image/image0x/HCS/HartwellKimberly/2002-01-W01-03-05-CN00002480-B/2009-04-01/15669/2002-01-W01-03-05-CN00002480-B_H03_s5_w2CD958C26-AE0C-455C-BFCE-62A7BF6108DE.tif"

Traceback (most recent call last):
  File "imagetile.pyc", line 118, in OnDClick
  File "imagetools.pyc", line 61, in ShowImage
  File "imagetools.pyc", line 52, in FetchImage
  File "imagereader.pyc", line 38, in ReadImages
  File "imagereader.pyc", line 140, in read_images_old_way
  File "imagereader.pyc", line 213, in ReadBitmap
  File "imagereader.pyc", line 237, in GetRawData

To make things worse, the release version (11710) has a Bio-Formats error:

Traceback (most recent call last):
  File "cellprofiler\utilities\jutil.pyc", line 299, in synchronous_closure
  File "bioformats\formatreader.pyc", line 372, in fn
ValueError: ('Could not find a Bio-Formats reader for %s', 'c:\\users\\dlogan\\appdata\\local\\temp\\tmp1s2ank.tif')
dlogan commented 10 years ago

New properties file here: \iodine\imaging_analysis\2007_11_07_Hepatoxicity_SPARC\2013_03_27_combinatorialscreen\Ground_Truth_Output\CP_only\2007_11_07_Hepatotoxicity_1_AssayDev_CP_only.properties

Example Old properties file that almost certainly worked before: \iodine\imaging_analysis\2007_10_19_Gilliland_LeukemiaScreens\Screen3_1Apr09_run3\2012_03_02LeukemiaScreens_Validation_v2_Screen3_run3_NEW.properties

dlogan commented 10 years ago

This was my mistake: I had used the wrong URL prepend, namely http://imageweb/image/CPALinks instead of http://imageweb/images/CPALinks

dlogan commented 10 years ago

And just for posterity sake, this is the error that really highlights had the CPLinks problem, from the "New" properties file above:

Exception: Image not found: "http://imageweb/image/CPALinks/cbnt/cbimageX/HCS/shanmeghan/combifinal/000008299669/2013-06-12/39901/combifinal_a01_s1a0430fc2-3308-44d8-ac70-d8d1eb8516ef.tif"