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CellProfiler / CellProfiler-plugins

Community-contributed and experimental CellProfiler modules.
http://plugins.cellprofiler.org/
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Add prototype CP4 plugin versions #107

Closed DavidStirling closed 3 years ago

DavidStirling commented 3 years ago

Plugins have been updated to fix their references for CP4. I've applied any obvious Python 2->3 fixes, but these plugins are otherwise entirely untested.

Where I've noticed anything without an obvious fix/replacement function I've added a # Todo note, but it looks like many of the plugins weren't functional in CP3 either.

bethac07 commented 3 years ago

Heroic effort!

Can you just go ahead and remove your auto-converts of callbarcodes and compensatecolors, since I've already done verified manual upgrades of those? Then go ahead and pull!

MariamFa commented 2 years ago

Sorry, very naive question: is there a way to install all the plugins at once. This is how I am doing it write now: Go to code> click on Raw>save as Then I go to next code and repeat

Thanks

DavidStirling commented 2 years ago

@MariamFa You could use git clone <url> (or the 'download zip' function under the 'code' dropdown on the main page) to grab the entire repository at once. That said, installing all the plugins from this repo generally isn't recommended. Many of the plugins have specific dependencies which need to be installed for them to work, and it's likely that some of those requirements won't be compatible with all the other plugins.