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CellProfiler / CellProfiler-plugins

Community-contributed and experimental CellProfiler modules.
http://plugins.cellprofiler.org/
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Malformed image name (is reported as 'missing') when pipeline runs 'Transforms' plugin module #118

Closed imoutsatsos closed 2 years ago

imoutsatsos commented 3 years ago

Using CellProfiler Windows v4.0.7 and latest CellProfiler4_AutoConvert plugins.

Trying to run a 'Transforms' pipeline step. The plugin module always fails with ValueError indicating missing image names.

The 'missing' image names are in fact valid image names but prefixed with a double colon ('::PROBE' for example) image

When we examine the exported pipeline file, we indeed observe a double colon separating the Transforms module parameter key-value as follows: image Even if we manually correct the pipeline file (so that a single colon replaces the double ones) and reload it, it still results to the same error. Note that in the CellProfiler UI, all modules of the pipeline are valid and checked green!

bethac07 commented 3 years ago

Hi @imoutsatsos ;

Can you try with the new version? It seems the setting text for the settings in that module had a ":" at the end of each setting text, which I think is what was causing the issues.

imoutsatsos commented 3 years ago

Thank you @bethac07 ; You are exactly right! it works now! Please, reference this issue in the commit and close issue