Closed julieaaj closed 1 year ago
Hi @julieaaj, So sorry about the delay. We updated the RunCellpose plugin and the instructions to use the plugins. If you still have this issue, could you use our new instructions with the more recent version of RunCellpose? Please find the instructions here. Let us know about any new issues!
Hi!
I have been trying to run CellProfiler from source to be able to use the RunCellPose plugin. Previously, I have been able to both run CellProfiler (regular program) and CellPose (GUI from Python) from my computer using CPU only. However, when I tried to run the CellPose plugin with my own pretrained model in CellProfiler from source, CellProfiler crashed everytime I tried to choose the input image in the module.
I then tried to test some of the built-in models (cyto2), and then I was actually able to start a test run of the module. However, after downloading the cyto2 model it also crashed without finishing the segmentation, as shown here:
Crash log from when I tried to load my own model: hs_err_pid77455.log
Crash log from when I tried to run cyto2: hs_err_pid77744.log
I have already tried to reduce number of worker threads in CP to 1, without success. I am planning on moving to another computer with GPU for the actual analysis run, but it would be nice to optimize and test the pipeline on my own computer first, so any help on this would be greatly appreciated.
Thanks, Julie