Closed callum-jpg closed 1 year ago
Changing the subprocess command to result = subprocess.run(cmd, shell=True)
will allow you to see the verbose terminal output of cellpose as it runs
So, I'll add this docker functionality to the pre-existing RunCellpose plugin and present the user with an option to run cellpose inside a docker or within a local python environment.
@bethac07 Since this works with built CellProfiler, how should the python option be handled? I suppose it will still be there, but should we throw some sort of error saying that only the docker approach works for the built app?
Testing in process! The docker is ~6 GB, so for me it's taking several minutes to download; we probably want to add a warning to folks.