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CellProfiler / CellProfiler-plugins

Community-contributed and experimental CellProfiler modules.
http://plugins.cellprofiler.org/
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RunOmnipose - HTTP error #241

Closed tsmith1711 closed 5 months ago

tsmith1711 commented 6 months ago

Hello, I am new for reporting errors so please ask if clarification is needed. I made a pipeline on my local Macbook M1 pro that included the RunOmnipose module. When I went to scale up my pipeline on our cluster, I encountered an error. I attached a screenshot of the error and was wondering if you have encountered this before. Any troubleshooting tips/tricks would be greatly appreciated!

Screenshot 2024-03-29 at 3 26 21 PM
tsmith1711 commented 6 months ago

For more context, we are running CellProfiler using a singularity container.

tsmith1711 commented 6 months ago

I figured it out - I needed to add the model name ("bact_phase") in the download_cellpose_models.py file. The entire path for the file I modified was:

CellProfiler-plugins/dockerfiles/RunCellpose/download_cellpose_models.py

ErinWeisbart commented 6 months ago

@tsmith1711 Thanks for sharing your solution!