Added rectangle ROIs and TiffData to omexml.py

CellProfiler / python-bioformats

Read and write life sciences file formats

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Closed thomasmfish closed 4 years ago

thomasmfish commented 4 years ago

Added rectangle ROIs and TiffData to omexml.py.

ROI and ROIRefs can now be added, though only using the ROI shape Rectangle for now.

TiffData allows for proper use of Planes in n-dimensional tiffs by linking each plane to the corresponding IFD - this uses code from https://github.com/AllenCellModeling/aicsimageio/blob/master/aicsimageio/vendor/omexml.py

0x00b1 commented 4 years ago

Awesome. Thanks, @thomasmfish!

thomasmfish commented 4 years ago

No worries, glad I could contribute!

0x00b1 commented 4 years ago

BTW, I apologize for this taking nearly a year to merge (we only update this package when we release a new version of CellProfiler)!