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CellProfiler / python-bioformats

Read and write life sciences file formats
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BioFormats 6.5.0 #128

Closed 0x00b1 closed 4 years ago

sbesson commented 4 years ago

@0x00b1 looking at the errors reported by Travis (JavaException: Invalid T index: 1/1 while reading TIFF files), I suspect the failures are related to the issue raised as https://github.com/ome/bioformats/issues/3571.

Short-term, I expect https://github.com/ome/bioformats/pull/3576 will help selecting a more appropriate reader for multi-page TIFF files in the bioformats.ImageReader API. Let us know if you would like some JARs allowing to test these changes in the context of python-bioformats. We will keep you posted when a formal release of Bio-Formats including this fix is out.

0x00b1 commented 4 years ago

@petrovm3 Would you mind pasting the output of pip freeze?

sbesson commented 4 years ago

Note with Bio-Formats 6.5.1 being released, the unit tests should now pass - see also #131 which is bumping the JAR to the latest version.

0x00b1 commented 4 years ago

Thanks @sbesson !