search

CellProfiler / python-bioformats

Read and write life sciences file formats
Other
131 stars 45 forks source link

Update to latest java version? #155

Open kmccormickTetra opened 2 years ago

kmccormickTetra commented 2 years ago

The bioformats java package was recently updated to properly handle certain .dm4 files. My understanding is that this python wrapper package (specifically the .jar file) also needs to be updated before it can implement this new functionality, as suggested by the most recent comment here: https://forum.image.sc/t/gatan-dm4-files-wont-open/55627/13

JKelle commented 2 years ago

I'm also experiencing a problem that I think will be solved by updating the .jar version.

JKelle commented 2 years ago

I would be great if there was an option to install bioformats separately and we can specify which jars python-bioformats should use. That way we can change bioformats version without any code changes to python-bioformats. (I'm not sure if that's feasible because I don't know how much python-bioformats code is specific to a given bioformats version)