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CellProfiler / python-bioformats

Read and write life sciences file formats
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Accessing Metadata and chnage in API #24

Closed sebi06 closed 9 years ago

sebi06 commented 9 years ago

Hi,

I am using the BioFormats package 5.1.1 from python (via python-bioformats) and noticed, that my old code does not work any more.

To get the scaling I used before (throws an error):

getPixelsPhysicalSizeX(0).getValue().floatValue()

but this seems to be now:

getPixelsPhysicalSizeX(0).value().floatValue()

Is this correct and why was it changed? Or is this only related to the BioFormats package itself?

Cheers,

Sebastian

joshmoore commented 9 years ago

From http://lists.openmicroscopy.org.uk/pipermail/ome-users/2015-May/005349.html :

you are correct. This API was modified between 5.0.x and 5.1.x as part of the changes to support units in the model.

sebi06 commented 9 years ago

OK. Thanks. So I will adapt my code.

Sebi