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CellProfiler / python-bioformats

Read and write life sciences file formats
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Error on "from bioformats import log4j" #53

Closed braymp closed 8 years ago

braymp commented 8 years ago

When starting CPA with bioformats 1.0.7 installed, I get the following error:

Traceback (most recent call last):
  File "C:/Users/brayma2/Desktop/GitHub/CellProfiler-Analyst/CellProfiler-Analyst.py", line 556, in <module>
    app.Start()
  File "C:/Users/brayma2/Desktop/GitHub/CellProfiler-Analyst/CellProfiler-Analyst.py", line 476, in Start
    from bioformats import log4j
ImportError: cannot import name log4j

I'm assuming this is a bioformats issue?

braymp commented 8 years ago

Workaround: Fall back to 1.0.6.

LeeKamentsky commented 8 years ago

OK should be fixed mark, please check whether pip uninstall python-bioformats and pip install python-bioformats fixes.

braymp commented 8 years ago

That did it; thanks!