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CellProfiler / python-bioformats

Read and write life sciences file formats
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add physical pixel size #73

Open helme opened 7 years ago

helme commented 7 years ago

Hi all, first of all, thanks a lot for bioformats. I'm using it for analyzing confocal laser microscopy data and needed the actual physical pixel size to avoid scale invariance. I added some lines after all the other getter and setter in omexml.py to get these information. These lines are attached.

bioformats_patch.py.tar.gz

Should this merged into the master branch!? Is this possible or not needed?

Cheers, helme

ehrenfeu commented 6 years ago

This has been partially addressed in commit 10722d5514c467071c6ab736acad3ba7f3c808d7 (adding methods for X/Y pixel size). The other parts are duplicated in issues #96 and #101 (with the corresponding PRs #102 and #103).

I guess this issue can be closed, latest once those PRs are merged...