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Cellular-Semantics / CL_KG

Building a Cell Ontology Knowledge-Base from data, and LLMs
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Curate/load Azimuth datasets #16

Closed dosumis closed 2 months ago

dosumis commented 3 months ago

We should load all datasets on Azimuth where these are on CxG

https://azimuth.hubmapconsortium.org/references/

@ubyndr I think we already have config for the Kidney reference dataset from previous work

dosumis commented 3 months ago

@JABelfiore - highest priority: https://cellxgene.cziscience.com/e/0b75c598-0893-4216-afe8-5414cab7739d.cxg/

Fields

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(May use examples in CL paper)

JABelfiore commented 3 months ago

Curated document can be found here https://docs.google.com/spreadsheets/d/1UTxIwa5yaBwc9PU12uk1fQ8n2sBSO0UyN5qfrMAsPgo/edit?usp=sharing