Open ubyndr opened 6 months ago
Copied from https://github.com/cellannotation/CAS-LinkML/issues/5 which is created by @dosumis
Query 1: Find leaf node CL terms with nested cell sets underneath
Cypher query for leaf nodes:
MATCH p=(c:Class:Cell)<-[:composed_primarily_of]-(s1)<-[:subcluster_of*..]-(s2) where not (c)<-[:SUBCLASSOF]-() return p
Example results from Sikemma:
Misses some potentially interesting cases where CL term is not leaf node.
However, without the leaf node clause, most datasets will return too much to review.
Query to find General term used for specific class.
e.g. T-Cell here:
Candidate query:
MATCH p=(c:Class:Cell)<-[:composed_primarily_of]-(s1:Cluster) where (c)<-[:SUBCLASSOF]-() and not (s1)<-[:subcluster_of]-() return p
Looks promising - and at least in this case it returns a set of relatively easy to assess results
*quick assessment - may not be 100% acurate
CC @AvolaAmg
Copied from https://github.com/cellannotation/CAS-LinkML/issues/5 which is created by @dosumis
Query 1: Find leaf node CL terms with nested cell sets underneath
Cypher query for leaf nodes:
Example results from Sikemma:
Misses some potentially interesting cases where CL term is not leaf node.
However, without the leaf node clause, most datasets will return too much to review.
Query to find General term used for specific class.
e.g. T-Cell here:
Candidate query:
Looks promising - and at least in this case it returns a set of relatively easy to assess results
*quick assessment - may not be 100% acurate